Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1319
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.2  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  

>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 408 RTESCRSRTKRNRHD 364
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 680 NHSQGNGLGRISGEEDLLSLTLV 748
           N   G GLG  SG   +LSL +V
Sbjct: 45  NGGGGGGLGIASGLSAMLSLVVV 67


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 467 LKQSIAMALAGVDACDFCPVL 529
           L    A A+ GVD C   PV+
Sbjct: 15  LLNETAKAIIGVDECQATPVI 35


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 477  ALRWPSRVLTHVISAQCSECQREEIQASAGKRR 575
            ALRW SR L   +     E Q  +  A   + R
Sbjct: 1632 ALRWRSRYLGDRMQRPMKESQENQQNAETQRER 1664


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 477  ALRWPSRVLTHVISAQCSECQREEIQASAGKRR 575
            ALRW SR L   +     E Q  +  A   + R
Sbjct: 1628 ALRWRSRYLGDRMQRPMKESQENQQNAETQRER 1660


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,448
Number of Sequences: 438
Number of extensions: 4897
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)