Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1319
         (760 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    31   0.83 
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.5  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   1.9  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.5  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    28   5.9  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    28   5.9  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   7.7  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    28   7.7  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    28   7.7  

>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 597 GSQMPRHLISDAHEWINEIPLSYLLSSETTAKGTGLGESAGKK 725
           G  +P + +SD +  INE+ ++  + ++ T K  GL ++ GK+
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKETVKENGLQKNGGKR 112


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 319 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 435
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 302 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 436
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 195 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 100
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 656 WNLVNPFMRVT-N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 510
           W + +  +RV+   +  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 157 WYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -3

Query: 656 WNLVNPFMRVT-N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 510
           W + +  +RV+   +  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 157 WYISSGLLRVSVALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 254 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 418
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 204 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 85
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 204 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 85
           ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,873,915
Number of Sequences: 28952
Number of extensions: 357832
Number of successful extensions: 897
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)