Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1317
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    30   0.25 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.57 
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   1.7  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   3.0  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    27   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   4.0  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   4.0  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.3  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.3  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   7.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   7.0  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   7.0  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   9.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   9.3  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   9.3  
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    25   9.3  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 519 PHYIKY*LAKTNITHEHRPDPXPARIRFPSKPDTPRSSEPILIPKLRIQFAD 364
           P  ++Y   K+++T E + D  P+R R    P  P SSE  L P   +  AD
Sbjct: 405 PWNMRYLDLKSDLTVEKKSDIYPSRARISISPMLPTSSEDNLHPLQPLTTAD 456


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 622 ARKIRGRPENAGPDPVRNVRRFSRV 548
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
 Frame = -3

Query: 451 GPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTG 287
           G HP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G
Sbjct: 252 GSHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSG 311

Query: 286 AT-SPRTSLT*ISRSAESIRTP 224
           +T SP+ +   I +  +SI TP
Sbjct: 312 STVSPKYT---IQQYVQSIGTP 330


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 165 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 290
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = -1

Query: 636  RHDLRLG-RSAEGRRTRVRIQSET*DDFRECHIKYIQFLRPHYIKY*LAKTNITHE 472
            + D +LG + A   + +V + S+  D  +E H+KY+Q    + ++  LAK +I  E
Sbjct: 1053 KEDTKLGEKCANIVQLQVDLLSKLADQEKEKHLKYLQSSYKNSLEVQLAKLDIVKE 1108


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 466  TRPGTGPHPLPVQTRHAPVLRANPYSEVTDPICRLP 359
            +RP T P P P + + APV + +    V  PI   P
Sbjct: 980  SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQP 1015


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 478 ARTSTRPGTGPHPLPVQTRHAPV 410
           A+ S  P   P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 147
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -3

Query: 217 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 80
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 430 GREAD--AGRXRVWSMFVRYVRFSELVFYIMRPQKLYIF 540
           GR  D   G+  VW  +VR+V F E          LY++
Sbjct: 103 GRPQDNGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 363 FPYLHYSID*RLFTLETCCGYGYEPARHL 277
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 264 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 103
           +P  + P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 468  RPDPXPARIRFPSKPDTPRSSEPILIPKLRIQFAD 364
            RP+  PAR +F   P+   +  P  +P L +++ D
Sbjct: 1003 RPNTAPARQKFARPPNIETAPIPRPLPNLPMEYND 1037


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  RVFDGVTQSGLKTPPRGPGRV 138
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 12  PVPIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRVPW 170
           PV +   G  TV+   P+S+  +    +P+ P  A+       + CL +   W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -2

Query: 377 SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPDTAANAVLFAF 198
           S   TSL+      R S+P R   D G+++   +TYIPH   K   ++     +A     
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269

Query: 197 RTISPFYRIP 168
           R++S  Y+ P
Sbjct: 270 RSVSRSYQSP 279


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 76  RVFDGVTQSGLKTPPRGPGRV 138
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 264 SPEFQGPQRVSGHRRKCGALR 202
           SPEF G  RV+ HR   G L+
Sbjct: 60  SPEFSGMSRVARHRLVYGLLK 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,065
Number of Sequences: 5004
Number of extensions: 62826
Number of successful extensions: 198
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)