Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1317
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 31 0.93
U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synapti... 28 4.9
U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synapti... 28 4.9
U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synapti... 28 4.9
AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform... 28 4.9
AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform... 28 4.9
AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein. 28 4.9
AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isofo... 28 4.9
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 28 4.9
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 28 4.9
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 6.5
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical ... 27 8.6
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.53
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 459 PXPARIRFPSKPDTPRSSEPILIPKLRI 376
P PA ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 440 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 288
A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 30.7 bits (66), Expect = 0.93
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 440 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 288
A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>U88174-3|ABP57824.1| 1058|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform d protein.
Length = 1058
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 646 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 705
Query: 299 GTN 291
GT+
Sbjct: 706 GTS 708
>U88174-2|AAP68903.1| 1211|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform c protein.
Length = 1211
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 799 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 858
Query: 299 GTN 291
GT+
Sbjct: 859 GTS 861
>U88174-1|ABP57823.1| 1124|Caenorhabditis elegans Tomosyn synaptic
protein protein1, isoform a protein.
Length = 1124
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 771
Query: 299 GTN 291
GT+
Sbjct: 772 GTS 774
>AY997306-1|AAY44303.1| 1133|Caenorhabditis elegans TOM-1 isoform E
protein.
Length = 1133
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 771
Query: 299 GTN 291
GT+
Sbjct: 772 GTS 774
>AY997305-1|AAY44302.1| 1128|Caenorhabditis elegans TOM-1 isoform D
protein.
Length = 1128
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 771
Query: 299 GTN 291
GT+
Sbjct: 772 GTS 774
>AY912103-1|AAX89146.1| 1058|Caenorhabditis elegans tomosyn protein.
Length = 1058
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 646 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 705
Query: 299 GTN 291
GT+
Sbjct: 706 GTS 708
>AY912102-1|AAX89145.1| 1124|Caenorhabditis elegans tomosyn isoform
A protein.
Length = 1124
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -2
Query: 467 DQTRXRPASASRPNPTRPGPQSQSLFRSYGSNLP---TSLTYI-ILSTRGSSPWRPAADM 300
D R P+S + N + P SQSL RS + TSL++I S + S P +
Sbjct: 712 DSQRESPSSGRQLNTSSPSTSSQSLERSMSTQPQESITSLSFIHSYSKKNDSKMSPCLWV 771
Query: 299 GTN 291
GT+
Sbjct: 772 GTS 774
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -3
Query: 565 RRFSRVSY*IYTVFEAALYKILTR*NEHNARTSTRPGTGPHPLPVQTRHAPVLRANPYSE 386
R + + VFEA ++ L+R E N P GP P + AP +PYS+
Sbjct: 183 RHMKNIGHRYIEVFEAT-HRDLSRFAEENDLRV--PRFGPPPFASAPQTAPRGAYDPYSQ 239
Query: 385 VTDP 374
TDP
Sbjct: 240 PTDP 243
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -3
Query: 565 RRFSRVSY*IYTVFEAALYKILTR*NEHNARTSTRPGTGPHPLPVQTRHAPVLRANPYSE 386
R + + VFEA ++ L+R E N P GP P + AP +PYS+
Sbjct: 183 RHMKNIGHRYIEVFEAT-HRDLSRFAEENDLRV--PRFGPPPFASAPQTAPRGAYDPYSQ 239
Query: 385 VTDP 374
TDP
Sbjct: 240 PTDP 243
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 428 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 321
+P + P +Q LF S+G LP I + SSP
Sbjct: 19 SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -2
Query: 251 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 123
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 235 IRTPPQMRCSSRSEPYLPSIGFHGT 161
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AC087794-3|AAG53700.1| 417|Caenorhabditis elegans Hypothetical
protein Y32G9A.9 protein.
Length = 417
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 211 CSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVP 38
C++ P+L I T+ +RQ + P+L +A H + FK E T+P
Sbjct: 80 CTTNFTPFLRPITVPVTKGVRQGDPISPNLFSACLEHVFRKLSCIEFKGEAEDYNTIP 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,136,083
Number of Sequences: 27780
Number of extensions: 371524
Number of successful extensions: 1342
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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