Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1316
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    64   2e-11
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 29/57 (50%), Positives = 37/57 (64%)
 Frame = +2

Query: 509 SFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 679
           S  Q+PLF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQH
Sbjct: 184 SLYQMPLFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQH 240



 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 31/66 (46%), Positives = 38/66 (57%)
 Frame = +3

Query: 255 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIXSLH 434
           +A+PR+NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL 
Sbjct: 99  VAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQ 158

Query: 435 LAGISS 452
           L GISS
Sbjct: 159 LTGISS 164



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 29/87 (33%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   IYSTNHKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXX 174
           I+STN KDI  LY                    EL  PGS  L G+ Q+YN  ++AH   
Sbjct: 12  IFSTNAKDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGIL 71

Query: 175 XXXXXXXXXXXXXXXN*LVPLILGAPE 255
                          N LVPL++GAP+
Sbjct: 72  MIFFFIIPALFGAFGNYLVPLMIGAPD 98



 Score = 32.3 bits (70), Expect = 0.074
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = +1

Query: 691 FGHPEVYILILPGF 732
           FGHPEVYILI+P F
Sbjct: 245 FGHPEVYILIMPAF 258


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 708 NFRMSKNQNKC*YKIGSPPPAGSKNDVFKFRS 613
           N+R+S  +++C    G+PP   SK+DV    S
Sbjct: 477 NYRISYGKDRC----GNPPRTNSKSDVLSVSS 504


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 290 TPTPLPYIINFKKNCRKWCRNRMNS 364
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,563
Number of Sequences: 5004
Number of extensions: 39629
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)