Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1316
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger) fa...    30   1.8  
At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger) fa...    30   1.8  
At3g29040.1 68416.m03633 receptor-like protein kinase-related co...    30   1.8  
At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    29   3.2  
At1g61400.1 68414.m06919 S-locus protein kinase, putative simila...    28   7.4  

>At5g63780.1 68418.m08005 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 21  RYWNIIFYFWYLIRNNW 71
           RYW I+F FW+L+   W
Sbjct: 340 RYWAILFIFWFLVFGIW 356


>At5g08750.1 68418.m01039 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 363

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 21  RYWNIIFYFWYLIRNNW 71
           RYW I+F FW+L+   W
Sbjct: 336 RYWAILFVFWFLVFGIW 352


>At3g29040.1 68416.m03633 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069
          Length = 248

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 548 SLQLIQIRVIDQMNII*SYINYCCNKINCSY 456
           ++QL+ IR++   N+   Y+N+ CN    +Y
Sbjct: 3   AMQLLLIRIVSSQNVTNEYLNHQCNNTQGTY 33


>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 254 NSIPTNK*YKILTPTPLPYIINFKKNCRKW 343
           +S+P +   +IL  TP   ++ FK  C+KW
Sbjct: 3   SSLPFDLILEILQRTPAESLLRFKSTCKKW 32


>At1g61400.1 68414.m06919 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 821

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 299 G*ESKSYIIYSWECYSGAPSIRGTN 225
           G E K+ + Y+WEC+ GA   RG N
Sbjct: 714 GEEGKTLLAYAWECWCGA---RGVN 735


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,303,128
Number of Sequences: 28952
Number of extensions: 205657
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)