Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1314
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   1.9  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    27   3.4  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   7.8  

>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 456 LSKNNAGVLRPAQRGQKPAWSKRAKAGLI 542
           + K + G L PA   QK AW+ R + GL+
Sbjct: 497 IDKMSRGRLVPADYNQKEAWTWRVEGGLL 525


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -2

Query: 398 EF*TATSVSATSPLCTLGTKHRAPADIIDRAPLP-PNRVSNETMKVVVFSDDRAKRSPTY 222
           +F +A     + P+ T   +   P     RA LP P     E ++V    ++ A+   T 
Sbjct: 354 DFKSALLALNSCPMYTYYERDAYPLPPSARAHLPFPVNFPKEELEV----ENNAQNGYTV 409

Query: 221 ATPLMSPYNARLESSSTGSSF 159
           +T +  PY ARL S S   +F
Sbjct: 410 STEITDPYLARLPSPSLRGTF 430


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = -2

Query: 320 IIDRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPK 141
           +++ +PLP     + ++ V   S      +PT A+ L  P +A L SS   +    +SP+
Sbjct: 598 VLNTSPLPKTPEKDRSLNVTPSSS-----TPTPASVLAPPSSASLSSSKDANRSVPESPR 652

Query: 140 PVPLAVVSLD 111
                 V+LD
Sbjct: 653 REKKNRVTLD 662


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 460 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 311
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,644
Number of Sequences: 5004
Number of extensions: 60164
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)