Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1314
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical pr... 32 0.44
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 1.4
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 1.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 2.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical ... 28 7.2
AF067940-7|AAC19206.1| 116|Caenorhabditis elegans Hypothetical ... 27 9.6
>Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical
protein F27E5.3 protein.
Length = 490
Score = 31.9 bits (69), Expect = 0.44
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = -2
Query: 389 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPL 210
T+ S TS +P D P PP S++ K DD K++P Y +
Sbjct: 317 TSNVPSGTSEASITNPILHSPPSKFDNIPSPPKAFSDDLRKS---PDDDVKQNPQYGMDI 373
Query: 209 MSPYNARLESSSTGS 165
+SP ++SS GS
Sbjct: 374 VSPVQL-VKSSDKGS 387
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = -2
Query: 407 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSP 228
+T+E T S +A P TKHR +++ ++ + +K + +R+P
Sbjct: 581 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 636
Query: 227 TYATPLMSPYNARLESSST 171
P+ P + E+ T
Sbjct: 637 ESTVPIGPPVEVKAEAIQT 655
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/79 (21%), Positives = 33/79 (41%)
Frame = -2
Query: 407 ITREF*TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSP 228
+T+E T S +A P TKHR +++ ++ + +K + +R+P
Sbjct: 577 VTKEIDTGASAAANVP----ETKHRVSGTVVEGKDSKSQLLATKKVKKPTIKNTEHRRAP 632
Query: 227 TYATPLMSPYNARLESSST 171
P+ P + E+ T
Sbjct: 633 ESTVPIGPPVEVKAEAIQT 651
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = -2
Query: 389 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPL 210
T+ + TSP T+GT APA++ P N S+ T + +PT P+
Sbjct: 623 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 681
Query: 209 MSPYNARLESSSTGSSFPADSPKPVPLAVV 120
+ S++T ++ + + P V
Sbjct: 682 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = -2
Query: 389 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPL 210
T+ + TSP T+GT APA++ P N S+ T + +PT P+
Sbjct: 679 TSPTKLPTSPPSTVGTSPTAPANLTTPTTAPVNPTSSTTAPTAPVNPTSPTTAPT-VPPV 737
Query: 209 MSPYNARLESSSTGSSFPADSPKPVPLAVV 120
+ S++T ++ + + P V
Sbjct: 738 TTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 257 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 138
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 257 FSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSPKP 138
F DD K ++ S + ESSSTGSS +D P+P
Sbjct: 1429 FLDDEEKTITDNSSSASSEDSDSDESSSTGSSSSSDDPRP 1468
>AL033536-1|CAA22138.1| 908|Caenorhabditis elegans Hypothetical
protein Y53C10A.4 protein.
Length = 908
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -2
Query: 254 SDDRAKRSPTYATP----LMSPYNARLESSSTGSSFPAD-SPKP 138
+DD R P + + L PY + SSS+ SS P+D +P+P
Sbjct: 681 NDDSDSRFPAFKSSSVAMLTEPYKSSSSSSSSTSSIPSDPAPRP 724
>AF067940-7|AAC19206.1| 116|Caenorhabditis elegans Hypothetical
protein F36F12.7 protein.
Length = 116
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -2
Query: 386 ATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSP 228
A V+ T P + + R P+ + +P + VS+ V ++ AK+SP
Sbjct: 32 AKPVADTPPAAMIAPRSRTPSPGAGKRSVPRDGVSSSVSSSTVSKNEPAKKSP 84
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,164,085
Number of Sequences: 27780
Number of extensions: 351134
Number of successful extensions: 1055
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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