Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1314
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g66980.1 68418.m08444 transcriptional factor B3 family protei... 30 1.7
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 29 2.9
At3g58900.1 68416.m06564 F-box family protein contains F-box dom... 29 3.8
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote... 29 3.8
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si... 29 3.8
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 28 5.1
At3g62370.1 68416.m07006 expressed protein 28 6.7
At1g64340.1 68414.m07291 hypothetical protein 28 6.7
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t... 28 6.7
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 8.9
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 8.9
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 8.9
>At5g66980.1 68418.m08444 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 334
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -2
Query: 659 GCHKPVIP---VVTFLAPLAKTLYTKGSIGRAFAVPMRTEHLDQASFCPFAPRGFLS 498
G H+ VIP + PL K + IGR + V +TE ++ FC F +G+ S
Sbjct: 19 GSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEE-RFCVFFTKGWQS 74
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -2
Query: 221 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 111
A+ + SP+N+ L S SS +D P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141
>At3g58900.1 68416.m06564 F-box family protein contains F-box domain
Pfam:PF00646
Length = 327
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 507 PAWSKRAKAGLIQMFSTHRDCESTAYRSFSIKSFSKRCQ---KSYHRDNWL 650
P KR K G++Q F D + IK+FS +C+ S H D W+
Sbjct: 54 PEERKREKEGILQSFMDFVDRVLDLHGDSLIKTFSLKCKTGVDSDHVDRWI 104
>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
beta-ketoacyl-CoA synthase - Simmondsia
chinensis,PID:g1045614
Length = 451
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 522 RAKAGLIQMFSTHRDCESTAYRSFSIK 602
RAK L+Q+ TH+ E T+Y+S ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317
>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
similarity to AMP-binding protein GI:1903034 from
[Brassica napus]; contains Pfam AMP-binding domain
PF00501
Length = 545
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 453 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 337
+P SNS P +VL + A + GD H TT+H W+ET
Sbjct: 5 LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45
>At1g01110.1 68414.m00014 expressed protein contains Prosite
PS00165: Serine/threonine dehydratases
pyridoxal-phosphate attachment site
Length = 364
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 314 DRAPLPPNRVSNETMKVVVFSDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADS 147
DRA L R+S + D+ + RSP++ + S + LE S SS +S
Sbjct: 291 DRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTES 346
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 438 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 343
N+ PG + P G NG +RF H+ ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193
>At1g64340.1 68414.m07291 hypothetical protein
Length = 265
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 564 DCESTAYRSFSIKSFSKR 617
DCEST Y SF + SF+++
Sbjct: 124 DCESTLYDSFELNSFNRQ 141
>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein low similarity to
glucoamylase S1/S2 [Precursor] from Saccharomyces
cerevisiae [SP|P08640], proteophosphoglycan from
Leishmania major [GI:5420387]; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 256
Score = 27.9 bits (59), Expect = 6.7
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Frame = -2
Query: 389 TATSVSATSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFSDDRAKRSP--TYAT 216
T + SA SP T + + + R PP VS+ + V S ++ SP ++++
Sbjct: 140 TTSPSSAKSPAITPSSPAVSHSPPPVRHSSPP--VSHSSPPVSHSSPPTSRSSPAVSHSS 197
Query: 215 PLMSPYN-ARLESSSTGSSFPADSPKPVPLAVVS 117
P+++ + + SSST SS A SP P P +S
Sbjct: 198 PVVAASSPVKAVSSSTASSPRAASPSPSPSPSIS 231
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 233 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 126
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 353 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 258
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 35 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKK 166
G +P + +SD + INE+ P +AK +E + GK+
Sbjct: 70 GGGLPNNGVSDTNSQINEVTVTP-QVIAKETVKENGLQKNGGKR 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,187
Number of Sequences: 28952
Number of extensions: 342170
Number of successful extensions: 957
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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