Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1313
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    31   0.17 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.67 
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    27   2.7  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   6.2  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    26   6.2  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.2  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 314 PQSQSLF-RSYGSNLPTS--LTYLFYRLEALHLGDLLRIWVRTGATSPRLWGIIANPNPQ 144
           P S   F  S G N P S   + LF R  A +LGD   + +R  + SPR+  I+ N  P+
Sbjct: 526 PNSSPRFVASDGPNRPASNGRSSLFSRGRASNLGD---VGLRLPSPSPRIHTIVPNSAPE 582

Query: 143 HEGVS 129
           H  ++
Sbjct: 583 HPSIN 587


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 342 SGCGRCRVWSMFVRYVRFSE 401
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 313 LRANPYSEVTDPICRLPLPTYSID*RLFTLETCCGYGYEPARHL 182
           L +     +  P    P    S+D R+F LE+  GY  EP   L
Sbjct: 144 LNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 231 SPWRPAADMGTNRRDISTFMGDNCKPQS 148
           SPW  +++       ++ F  DNCK +S
Sbjct: 209 SPWISSSNFNPYEASLANFQSDNCKLKS 236


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 306 PILIPKLRIQFADFPYLLILSTRGSSPWRPAA 211
           P ++PKL+  + D   L+I S +   P +P+A
Sbjct: 100 PSVVPKLKALYQDNYSLVIFSNQNGIPRKPSA 131


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 379 TNIDQTRHRPHPLPVQTRHAPV 314
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,847
Number of Sequences: 5004
Number of extensions: 62416
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)