Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1313
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.92 
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    30   2.1  
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584...    29   3.7  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   4.9  
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   4.9  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   8.6  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   8.6  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   8.6  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   8.6  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    28   8.6  

>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -3

Query: 379 TNIDQTRH------RPHPLPVQTRHAPVLRANP 299
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 349 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTYSI 245
           H L +  RH P L+A P S +    C+LPL + +I
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPLISSAI 141


>12_02_1045 +
           25656495-25656566,25657788-25657884,25658327-25658419,
           25658524-25658644,25659115-25659181,25659261-25659302,
           25659455-25659583,25659674-25659733,25659887-25659929,
           25660198-25660280,25660496-25661002,25661088-25661588
          Length = 604

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = -3

Query: 499 NAGPDPVRNVRRFSRVSY*IYTVFEA-ALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTRH 323
           + GPD V  V   +R    + T FEA A+    N ++ +    I     +    PVQ  H
Sbjct: 94  STGPDEV--VMMMTRTGSKVITKFEASAVKVTPNQMRSSACKMIRLIVQQTRTYPVQEEH 151

Query: 322 APVLRANPYSEVTDPICRLPLPTYSID 242
           A  ++ + Y + T      P P Y ++
Sbjct: 152 AIEMKLSFYEDTTPEDYEPPFPKYCVN 178


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 355 RPHPLPVQTRHAPVLRANPYSEVTDP 278
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 182  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 90
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -1

Query: 381 ARTSTRPGTGRIRFPSKPDTPRSSE 307
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 570 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 698
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -1

Query: 369 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 283
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 570 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 698
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 156 PQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTS 52
           PQ P    F GLP  +G  +H D  ++A   P  S
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHPLLS 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,294,168
Number of Sequences: 37544
Number of extensions: 489075
Number of successful extensions: 1409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)