Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1313
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.3
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 4.4
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 4.4
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 4.4
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 4.4
Z68753-2|CAD56618.1| 480|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z68753-1|CAA92989.1| 499|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical p... 28 7.7
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 28 7.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 28 7.7
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 28 7.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 28 7.7
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 28 7.7
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 28 7.7
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 388 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 275
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 603 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 701
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 603 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 701
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 405 LTR*NEHNARTSTRPGTGRIRFPSKPDT 322
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 405 LTR*NEHNARTSTRPGTGRIRFPSKPDT 322
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 405 LTR*NEHNARTSTRPGTGRIRFPSKPDT 322
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 405 LTR*NEHNARTSTRPGTGRIRFPSKPDT 322
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>Z68753-2|CAD56618.1| 480|Caenorhabditis elegans Hypothetical
protein ZC518.1b protein.
Length = 480
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 452 HSRKSSYVSDWIRTRVLRPPRIFLAVSRVGFVSCAIG 562
H S DW+ ++ P IFLAV R+ F+ C IG
Sbjct: 220 HGLASLLKYDWVPVPLVYPQVIFLAV-RIYFMICLIG 255
>Z68753-1|CAA92989.1| 499|Caenorhabditis elegans Hypothetical
protein ZC518.1a protein.
Length = 499
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 452 HSRKSSYVSDWIRTRVLRPPRIFLAVSRVGFVSCAIG 562
H S DW+ ++ P IFLAV R+ F+ C IG
Sbjct: 220 HGLASLLKYDWVPVPLVYPQVIFLAV-RIYFMICLIG 255
>Z98877-14|CAD56615.1| 338|Caenorhabditis elegans Hypothetical
protein Y69H2.14 protein.
Length = 338
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Frame = -1
Query: 168 DNCKPQSPARRSFSGLPGPLGQ----GE--HADSFSVA 73
++C+ +PAR+ G PGP GQ GE H+D+ S A
Sbjct: 190 NDCQTCAPARQGAPGPPGPAGQPGQPGEPGHSDTSSTA 227
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 4596 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 4651
Query: 72 RVR 64
RV+
Sbjct: 4652 RVK 4654
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 5125 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 5180
Query: 72 RVR 64
RV+
Sbjct: 5181 RVK 5183
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 4806 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 4861
Query: 72 RVR 64
RV+
Sbjct: 4862 RVK 4864
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 4596 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 4651
Query: 72 RVR 64
RV+
Sbjct: 4652 RVK 4654
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 5125 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 5180
Query: 72 RVR 64
RV+
Sbjct: 5181 RVK 5183
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 4806 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 4861
Query: 72 RVR 64
RV+
Sbjct: 4862 RVK 4864
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 243 TRGSSPWRPAADMGTNRRDISTFMGDNCKPQSPARRSFSGLPGP---LGQGEHADSFSVA 73
T ++P RP +MG RDI + G+ K P F+ P P +GE+ S +
Sbjct: 4015 TADNAPTRPKINMGMLTRDILAYAGERAKILVP----FAASPAPKVTFSKGENKISPTDP 4070
Query: 72 RVR 64
RV+
Sbjct: 4071 RVK 4073
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,291
Number of Sequences: 27780
Number of extensions: 376049
Number of successful extensions: 1085
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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