Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1313
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          23   3.8  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          23   3.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.8  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   3.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 341 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 439
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 341 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 439
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHDLR 525
           RT SC SR + +RH+ R
Sbjct: 226 RTSSCHSRYEDSRHEDR 242


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHDLR 525
           RT SC SR + +RH+ R
Sbjct: 226 RTSSCHSRYEDSRHEDR 242


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHDLR 525
           RT SC SR + +RH+ R
Sbjct: 226 RTSSCHSRYEDSRHEDR 242


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHDLR 525
           RT SC SR + +RH+ R
Sbjct: 226 RTSSCHSRYEDSRHEDR 242


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHDLR 525
           RT SC SR + +RH+ R
Sbjct: 226 RTSSCHSRYEDSRHEDR 242


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 86  ESACSPWPRGPGNPLKLLRA 145
           + + SP PR P NP++ L+A
Sbjct: 13  DRSTSPLPRKPVNPVQELKA 32


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHDLR 525
           RT SC SR + +RH+ R
Sbjct: 226 RTSSCHSRYEDSRHEDR 242


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 575 RTESCRSRTKRNRHD 531
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,478
Number of Sequences: 438
Number of extensions: 4594
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)