Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1313
(720 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 31 0.77
At1g34575.1 68414.m04297 FAD-binding domain-containing protein s... 30 1.3
At1g76965.1 68414.m08961 glycine-rich protein 30 1.8
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 29 2.3
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 29 2.3
At1g30710.1 68414.m03754 FAD-binding domain-containing protein s... 29 3.1
At2g45560.1 68415.m05665 cytochrome P450 family protein 29 4.1
At4g15540.1 68417.m02374 nodulin-related low similarity to MtN21... 28 7.2
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc... 27 9.5
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -1
Query: 168 DNCKPQSPARRSFSGLPGPLGQGEHADSFSVARVRPRTSKGIT 40
D+C SP+RR G+ PL G +DS + R G T
Sbjct: 415 DSCMSSSPSRRVIRGIDDPLLNGSFSDSGVTRTKKHRRKSGYT 457
>At1g34575.1 68414.m04297 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 527
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 248 YRLEALHLGDLL-RIWVRTGATSPRLWGIIANPNPQHEGVSAG-CPGL 111
+ L A+ + L WV++GAT ++ +AN + G AG CPGL
Sbjct: 130 FNLRAIEIDPKLDTAWVQSGATLGEIYYNVANKSNNLRGFPAGICPGL 177
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 363 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFADFPYLL 253
PG + FP KP+ P P +P+L + F D LL
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGDDRRLL 129
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -1
Query: 429 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLL 253
LRP ++L + ++ ST+PGTG ++ D+PR S ++ K +++ D P L
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
Query: 252 ILSTRGSSP 226
I T G+SP
Sbjct: 409 I--TPGASP 415
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = -1
Query: 429 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLL 253
LRP ++L + ++ ST+PGTG ++ D+PR S ++ K +++ D P L
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
Query: 252 ILSTRGSSP 226
I T G+SP
Sbjct: 409 I--TPGASP 415
>At1g30710.1 68414.m03754 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 531
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 206 WVRTGATSPRLWGIIANPNPQHEGVSAG-CPGL 111
WV++GAT ++ +AN + G AG CPGL
Sbjct: 148 WVQSGATLGEIYYGVANKSNDLRGFPAGICPGL 180
>At2g45560.1 68415.m05665 cytochrome P450 family protein
Length = 512
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 334 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 492
GR+ + G+GR C LA ++M LY F+ L K VL LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487
>At4g15540.1 68417.m02374 nodulin-related low similarity to MtN21
[Medicago truncatula] GI:2598575
Length = 270
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -2
Query: 302 SLFRSYGSNLPTSLTYLFYRLEALHLGDLLRIWVRTGATSPRLWGIIAN 156
SL +LPT+ + LF+++ L L + ++ +R+ AT ++ G I +
Sbjct: 64 SLIFGRSRSLPTAKSSLFFKIFLLALLGMEQVMLRSSATQAKIIGTIVS 112
>At3g13784.1 68416.m01741 beta-fructosidase, putative /
beta-fructofuranosidase, putative / cell wall invertase,
putative similar to beta-fructofuranosidase GI:402740
from [Arabidopsis thaliana]
Length = 569
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 37 VCDALRCPGPHARYTEGISMFSL--A*RPGQPAETPSCWGLGFAIIPH 174
V D + HA T+ I+ +L A RP +P++ CW I+P+
Sbjct: 77 VMDVNKTVWGHATSTDLINWITLSPAIRPSRPSDINGCWSGSVTILPN 124
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,202,711
Number of Sequences: 28952
Number of extensions: 355251
Number of successful extensions: 898
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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