Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IJU7 Cluster: Putative uncharacterized protein; n=1; ...    35   0.97 
UniRef50_Q7N071 Cluster: Similarities with the central region of...    33   3.0  
UniRef50_A7R6Y3 Cluster: Chromosome undetermined scaffold_1484, ...    33   3.9  
UniRef50_A2FN80 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_Q64Q37 Cluster: Putative O-antigen polymerase; n=1; Bac...    33   5.2  
UniRef50_Q24DN1 Cluster: Protein kinase domain containing protei...    32   6.8  
UniRef50_P25355 Cluster: Copper transport protein 86; n=2; Sacch...    32   6.8  

>UniRef50_Q8IJU7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 1345

 Score = 35.1 bits (77), Expect = 0.97
 Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +3

Query: 9   YKYCFFLLITKSLMLLIFTNAPRIYANNFYMKK-TIVDSNMIYTGNTIFHNYK*TNKWTS 185
           Y   +F+ I    +LL        Y NN+Y      V + MIY+   IF N   TN WT 
Sbjct: 115 YSNIYFVCINTLFLLLNNITQNNNYHNNYYHNNYNDVINCMIYSCFDIFFNLISTNNWTR 174

Query: 186 FRL*ISLIK*INF 224
             L I +   +NF
Sbjct: 175 KNLHIQIFSKLNF 187


>UniRef50_Q7N071 Cluster: Similarities with the central region of
           DNA-directed RNA polymerase; n=1; Photorhabdus
           luminescens subsp. laumondii|Rep: Similarities with the
           central region of DNA-directed RNA polymerase -
           Photorhabdus luminescens subsp. laumondii
          Length = 831

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 23/67 (34%), Positives = 36/67 (53%)
 Frame = -1

Query: 211 LIKLIYSRNDVHLFVYL*L*NIVLPVYIMFESTIVFFI*KLFA*IRGALVKISNIKDFVI 32
           +I L+ S     + +Y+    I LP+    E + +  I  L A +R AL  I+NI  F+I
Sbjct: 25  VINLLSSFFSFSILIYI----ITLPLTNSLEESSIGLIIFLIAILRPALSVINNISLFLI 80

Query: 31  NKKKQYL 11
           NKK+ Y+
Sbjct: 81  NKKQAYI 87


>UniRef50_A7R6Y3 Cluster: Chromosome undetermined scaffold_1484,
           whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
           Chromosome undetermined scaffold_1484, whole genome
           shotgun sequence - Vitis vinifera (Grape)
          Length = 218

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -2

Query: 144 CCLCISCLNPLLSSSYKNCLHKFV 73
           CCL ISC +  LS+S  NC HK V
Sbjct: 38  CCLIISCQDSQLSASPLNCRHKLV 61


>UniRef50_A2FN80 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1092

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 42   SLMLLIFTNAPRIYANNFYMKKTIVDSNMIYTGNTIFHN 158
            S +LLIF   P+I   +F +     DSN++Y  +TI +N
Sbjct: 936  SAILLIFRKYPQIVNQDFGLHFEYTDSNLVYRNSTIHYN 974


>UniRef50_Q64Q37 Cluster: Putative O-antigen polymerase; n=1;
           Bacteroides fragilis|Rep: Putative O-antigen polymerase
           - Bacteroides fragilis
          Length = 359

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 176 FVCLFIIMKYCVACVYHV*IHYCLL 102
           FV   +++ YC+ C++HV   YC L
Sbjct: 304 FVFEIVLVPYCITCIHHVKFRYCFL 328


>UniRef50_Q24DN1 Cluster: Protein kinase domain containing protein;
           n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
           domain containing protein - Tetrahymena thermophila
           SB210
          Length = 787

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 74  TNLCKQFLYEEDNSGFKHDIHRQHNIS*L*IDKQMDIISTINKFNQ--VNK-FQII 232
           TN+  Q LY++    FKH I+R+ +IS    DK   II T  K+ Q  VNK +QII
Sbjct: 712 TNILGQELYQKVLGKFKHHINREVDISKQDQDKINLIIDTDLKYKQECVNKLYQII 767


>UniRef50_P25355 Cluster: Copper transport protein 86; n=2;
           Saccharomyces cerevisiae|Rep: Copper transport protein
           86 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 563

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +2

Query: 176 MDIISTINKFNQVNKFQIIYWSFFLIINARDIYETDI 286
           +DIIS + KFN V KF I Y S  ++++  D ++ ++
Sbjct: 359 LDIISDLCKFNHVRKFLISYDSVKILVSLLDTFQKNL 395


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,343,969
Number of Sequences: 1657284
Number of extensions: 7011360
Number of successful extensions: 17729
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17711
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32201017387
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)