Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    23   2.1  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   5.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   6.5  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   6.5  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 467 SFKHLMQFNCWRIQKNYLHYMSII 396
           +F HL   N  R+ KN++  +S+I
Sbjct: 248 TFVHLAVLNILRVGKNFVCLLSLI 271


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 408  IMEVILLNSPAVKLHKMFKRRKKVSHINWSFMKTLN 515
            +   ++LNS  V +  +   +K + H++W F   +N
Sbjct: 1226 VFTFLMLNSLYVIVIFLLTLKKDLLHLDWPFDPKVN 1261


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 408  IMEVILLNSPAVKLHKMFKRRKKVSHINWSFMKTLN 515
            +   ++LNS  V +  +   +K + H++W F   +N
Sbjct: 1226 VFTFLMLNSLYVIVIFLLTLKKDLLHLDWPFDPKVN 1261


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 196 YSRNDVHLFVYL*L*NIVLPVYIMFESTIVFFI*KLFA*IRGALVKISN 50
           Y R+   L  YL    + L + I+F   +V    + ++   G LV I N
Sbjct: 126 YKRHKKRLLCYLLARYVALALVILFSEILVIVSEQEWSFSTGLLVMIFN 174


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 196 YSRNDVHLFVYL*L*NIVLPVYIMFESTIVFFI*KLFA*IRGALVKISN 50
           Y R+   L  YL    + L + I+F   +V    + ++   G LV I N
Sbjct: 144 YKRHKKRLLCYLLARYVALALVILFSEILVIVSEQEWSFSTGLLVMIFN 192


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,289
Number of Sequences: 336
Number of extensions: 2213
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)