Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    30   0.18 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   6.8  
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...    25   6.8  

>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 467 SFKHLMQFNCWRIQKNYLHYMSI 399
           S K L QF CW I K +L Y ++
Sbjct: 17  SLKVLQQFRCWNISKTFLSYRTL 39


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 235 VNYLKFIYLIKLIYSRNDVHLFVYL 161
           +N   FIYL++   S+ D H F+ L
Sbjct: 97  INISGFIYLLEQAMSKRDYHTFLVL 121


>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +3

Query: 66  NAPRIYANNFYMKKTIVDSNMIYTGNTIFHN 158
           NA  I A  F  KKT +  N  Y G   + N
Sbjct: 146 NAKDIIAVGFDPKKTFIFMNSTYVGGAFYQN 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,872,208
Number of Sequences: 5004
Number of extensions: 34813
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)