Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)                   30   1.00 
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)                  27   7.0  
SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)                27   9.3  

>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
          Length = 347

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
 Frame = -3

Query: 386 YC*LF*LLFISISCCFLFYL---IF*RNLIKNHKVF*YQFHKYLLHL*LERNSSKLFEIY 216
           YC LF L+ I  +C F+ Y    +F    I + ++F    +  L  L +    ++LF IY
Sbjct: 144 YCSLFVLITIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVL-ITIVHARLFMIY 202

Query: 215 LLD*TYL*SK*CPFVCLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
                ++        CLF+I  YC   V    +H CL  I   C
Sbjct: 203 AYCSLFVFIT-IVHACLFMINAYCSLFVLITIVHACLFMIYAYC 245



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 170 CLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
           CLF+I  YC   V    +H CL  I   C
Sbjct: 117 CLFMIYAYCSLFVLITIVHACLFMIYAYC 145



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 170 CLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
           CLF+I  YC   V    +H CL  I   C
Sbjct: 137 CLFMIYAYCSLFVLITIVHACLFMIYAYC 165


>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
 Frame = -3

Query: 386 YC*LF*LLFISISCCFLFYL---IF*RNLIKNHKVF*YQFHKYLLHL*LERNSSKLFEIY 216
           YC LF L+ I  +C F+ Y    +F    I + ++F    +  L  L +    ++ F IY
Sbjct: 45  YCSLFVLITIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVL-ITIVHARPFMIY 103

Query: 215 LLD*TYL*SK*CPFVCLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
                ++        CLF+I  YC   V    +H CL  I   C
Sbjct: 104 AYCSLFVFIT-IVHACLFMIYAYCSLFVLITIVHACLFMIYAYC 146



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 170 CLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
           CLF+I  YC   V    +H CL  I   C
Sbjct: 18  CLFMIYAYCSLFVLITIVHACLFMIYAYC 46



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 170 CLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
           CLF+I  YC   V    +H CL  I   C
Sbjct: 38  CLFMIYAYCSLFVLITIVHACLFMIYAYC 66



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 170 CLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
           CLF+I  YC   V    +H CL  I   C
Sbjct: 138 CLFMIYAYCSLFVLITIVHACLFMIYAYC 166


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
 Frame = -3

Query: 173 VCLFIIMKYC----VACVYHV*IHYCL 105
           VCL + ++YC    V C   V +HYCL
Sbjct: 332 VCLLLSVRYCLSVTVHCCLSVTVHYCL 358


>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 170 CLFIIMKYCVACVYHV*IHYCLLHIKIVC 84
           CLF+I  YC   V    +H CL  I   C
Sbjct: 137 CLFMIYAYCSLFVLITIVHACLFMIYAFC 165


>SB_944| Best HMM Match : zf-B_box (HMM E-Value=6.7e-15)
          Length = 629

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = -2

Query: 207 LNLFIVEMMSICLSIYNYEILCCLCISCLN-----PLLSSSYKNCLHKFVEH 67
           L+ F+ EM +        E+ C LCI   N     P L S  ++CL +   H
Sbjct: 114 LSFFLEEMATSASRRLEDEVTCSLCIEHFNDPRVLPCLHSFCRHCLEELAVH 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,267,850
Number of Sequences: 59808
Number of extensions: 205633
Number of successful extensions: 519
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)