Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide...    23   6.2  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    23   8.1  

>DQ437579-1|ABD96049.1|  575|Anopheles gambiae short neuropeptide F
           receptor protein.
          Length = 575

 Score = 23.0 bits (47), Expect = 6.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 176 FVCLFIIMKYCVACV 132
           FV  FIIM +C  CV
Sbjct: 277 FVLPFIIMAFCYICV 291


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -1

Query: 214 YLIKLIYSRNDVHLFVYL*L*NIVLPVYIMFESTI 110
           +++KLI  R  V+L V++ L    + +Y++F  ++
Sbjct: 140 FMLKLIAIRMLVNLVVFVILLLAAITIYVLFNVSL 174


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 443,668
Number of Sequences: 2352
Number of extensions: 8642
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 47360208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)