Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific ...    29   2.6  
AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 235 VNYLKFIYLIKLIYSRNDVHLFVYL*L*NIVLPVYIMFESTIVFF 101
           +N LK+++    +YS+N +H +V      IVL   + F   +V F
Sbjct: 127 LNSLKYLFPFNSVYSQNSIHKYVRHFSVAIVLKDVLFFSPLLVHF 171


>Z70683-2|CAA94592.2|  717|Caenorhabditis elegans Hypothetical
           protein F13B12.3 protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 378 LTVILFNNTHIMEVILLNSPAVKLHKMFKRRKKVSHINWSF 500
           + V LF    +  V+L+N     L K ++   KVSHI W +
Sbjct: 534 IPVFLFCYMLVSSVLLVNLVTALLSKKYEDIDKVSHIYWKY 574


>U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific
           family, class rprotein 2 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +2

Query: 74  TNLCKQFLYEEDNSGFKHDIHRQHN--IS*L*IDKQMDIISTINKFNQVNKFQIIYWSFF 247
           TN+ +++LY E +S +K  I   H+       +   +DI+ T   F  + +  I   S F
Sbjct: 31  TNIIRRYLYNEFSSKYKETIEDLHSREFRIQGVPLPLDILDTNFNFPDMRRLSIASASAF 90

Query: 248 LIINARD 268
           L++ + D
Sbjct: 91  LLVFSVD 97


>AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical
           protein F59B1.4 protein.
          Length = 266

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 241 TPVNYLKFIYLIKLIYSRNDVHLFVY 164
           TPVN+L F  +IK  +SR +  LF Y
Sbjct: 29  TPVNFLAFYLIIK--HSRRETKLFKY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,375
Number of Sequences: 27780
Number of extensions: 183883
Number of successful extensions: 513
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)