Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1311
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23030.1 68417.m03321 MATE efflux protein-related contains Pf...    28   3.3  
At3g26090.1 68416.m03249 expressed protein                             28   3.3  
At5g18520.1 68418.m02187 expressed protein                             28   4.3  
At3g09570.1 68416.m01137 expressed protein                             28   4.3  
At3g04020.1 68416.m00423 expressed protein                             27   5.7  

>At4g23030.1 68417.m03321 MATE efflux protein-related contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 502

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 207 LNLFIVEMMSICLSIYNYEILCCLCISCLNP 115
           + L I   +S+CL  + YEI+  LC   LNP
Sbjct: 259 MKLAIPSCVSVCLEWWWYEIMILLCGLLLNP 289


>At3g26090.1 68416.m03249 expressed protein
          Length = 459

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/42 (26%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
 Frame = +3

Query: 18  CFFLLITKSLMLLIFTNAPRIYANNFYMK--KTIVDSNMIYT 137
           CFF+L+++S++  +   APR  +++F++   + I   N++++
Sbjct: 24  CFFVLLSRSVLPCLIHKAPRTNSSSFWIPVIQVISSFNLLFS 65


>At5g18520.1 68418.m02187 expressed protein
          Length = 440

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 505 FIKDQLMWETFFLLLNILC 449
           FIKD + W   FLL++I+C
Sbjct: 305 FIKDWVTWNQVFLLVDIIC 323


>At3g09570.1 68416.m01137 expressed protein
          Length = 439

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 505 FIKDQLMWETFFLLLNILC 449
           FIKD + W   FLL++I+C
Sbjct: 304 FIKDWVTWNQIFLLVDIVC 322


>At3g04020.1 68416.m00423 expressed protein 
          Length = 236

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 182 IISTINKFNQVNKFQIIYWSFFLIINARDIYETDIKK 292
           ++  INK     +  I++  +FL INARD Y   + +
Sbjct: 141 LVDGINKNESRRRALILFCLYFLDINARDAYMVSVDR 177


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,776
Number of Sequences: 28952
Number of extensions: 154088
Number of successful extensions: 355
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)