Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1310
         (678 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    26   0.33 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    26   0.33 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.0  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   3.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.0  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 162 HGTRTLRQKRKLFP-DLSAASSGHFGLPRRTIVFKDEGTIIETVPLPGSG 16
           HG R    K+K+ P D SAA++           F+ E  +I+T P  G G
Sbjct: 23  HGVRAPGAKKKVGPIDQSAAAASWHDFDNSDF-FQSEHAVIQTHPSIGGG 71


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 162 HGTRTLRQKRKLFP-DLSAASSGHFGLPRRTIVFKDEGTIIETVPLPGSG 16
           HG R    K+K+ P D SAA++           F+ E  +I+T P  G G
Sbjct: 23  HGVRAPGAKKKVGPIDQSAAAASWHDFDNSDF-FQSEHAVIQTHPSIGGG 71


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 251 NFQGPQRVSGHRRKC 207
           NF GP R++   R+C
Sbjct: 601 NFHGPHRLAARSRRC 615


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 251 NFQGPQRVSGHRRKC 207
           NF GP R++   R+C
Sbjct: 493 NFHGPHRLAARSRRC 507


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 169 RIPWNSNAQAEKKTLPGPLG 110
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/25 (32%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 29  SGTVSIIVPSSLK-TIVRRGNPKWP 100
           S   ++++P  L  ++ R G+P+WP
Sbjct: 58  SSAHTVLIPQPLHPSVPRLGHPQWP 82


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 447 HRPHPLPVQTRHAPVLRANPYS 382
           +R HPL + + H  +L  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 270 PRTSLTEFSRSAESIRTPPQMRCSSRS 190
           P T L++     +   TPP + CS  S
Sbjct: 44  PETELSDSDCDLDVTGTPPPLDCSKNS 70


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 521 LYIFNMTLAKIVLRFGLDPDPRSP 592
           L +  + LA +V  F  DP  R+P
Sbjct: 444 LLVSKVALASVVKDFVFDPTERTP 467


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,974
Number of Sequences: 336
Number of extensions: 3609
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)