Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1310
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 29 2.1
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.7
At5g42370.1 68418.m05159 expressed protein 28 4.9
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 4.9
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 4.9
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 4.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 28 6.5
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 28 6.5
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 6.5
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 6.5
At5g22390.1 68418.m02612 expressed protein 27 8.6
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 27 8.6
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 452 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 357
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 239 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 105
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 178 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNNR 68
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 234 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 136
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 375 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 226
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 375 TDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESI 226
T LPL L Y L + D RI +G T PR + T F + S+
Sbjct: 289 TSLAAELPLVPLPYLLLPSYSADDPRILYSSGTTGPRNAQTRFQSNQSSV 338
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 161 MELERSGRKENSSRTSRRRLQATLGYPVEQSFLKTRERLL 42
MEL+RS ++ T +RRLQ L +P E+S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = -2
Query: 161 MELERSGRKENSSRTSRRRLQATLGYPVEQSFLKTRERLL 42
MEL+RS ++ T +RRLQ L +P E+S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 461 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 342
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 461 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 342
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 113 ERSGKSFLFCLSVRVPWNPIEG 178
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 44 IIVPSSLKTIVRRGNPKWPEDAAE 115
++V SS+ +V NPKWP+D A+
Sbjct: 116 VVVVSSIAAVVY--NPKWPQDVAK 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,708
Number of Sequences: 28952
Number of extensions: 353089
Number of successful extensions: 1052
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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