Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1309
(588 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 40 2e-04
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 31 0.12
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 0.88
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 27 2.0
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 3.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 4.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 4.7
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.2
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +2
Query: 140 LHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVLH-SNANMKNFTSLFMK 301
L +E ++ LP V+RRI LR LQK + D+E++F E+ A K + +F +
Sbjct: 63 LTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKR 117
Score = 33.1 bits (72), Expect = 0.031
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +3
Query: 453 RASNGSQCKGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIKV 587
+ G KG P + ++NV LSEM+ DE L L DI++
Sbjct: 154 KQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRI 198
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 367 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFW 498
D+ EEE+ + + A E +E ++ + + KGIP+FW
Sbjct: 126 DEPTEEEIKKG-EAADENEKKEPTSSESKKQEGGDDTKGIPEFW 168
>SPBC2D10.11c |||nucleosome assembly protein Nap2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 31.1 bits (67), Expect = 0.12
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
KG P + + NV ++ EM+ DE +L+ L DI+
Sbjct: 164 KGIPEFWLTCLHNVFLVGEMITPEDENVLRSLSDIR 199
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 28.3 bits (60), Expect = 0.88
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 124 GHHKSPSCRSDGIPTPECSSANPRLENSSEGVCRH*GQVL 243
GHHK+P CR+ + S N R E + V RH G V+
Sbjct: 485 GHHKNPKCRAKKLVV---ESRNGRREYVQDAVRRH-GDVI 520
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 27.1 bits (57), Expect = 2.0
Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Frame = -1
Query: 576 LASILELVHHVLASFR*ALRHS*YVVPKVWDTLYIGIH-WRLDSLVILLFLTLSDGSI-- 406
LAS++ V +A F +L +S + Y G+ + + ++ ILLF ++ G++
Sbjct: 628 LASVMYYVAEQVAFF--SLGNSNSLATVDLSQAYTGLDSYNIFAVGILLFTSVFAGALWW 685
Query: 405 -LYRPS*LFFFSVITPWVETFIIIRFIC 325
L++P + SV T W+ + I + F+C
Sbjct: 686 CLHQPKRMMDRSVKTFWIMSSISLTFLC 713
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 403 QNAAITEGEEKKDDKAIEPPMDPNVKGIP 489
+N+ + E EEK D +AIE + +V G P
Sbjct: 554 KNSLVNEAEEKNDLEAIEAAKNFHVNGKP 582
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/63 (26%), Positives = 28/63 (44%)
Frame = +2
Query: 92 KSGVTRNEMIAAITNRLHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVLHSNAN 271
K +T NE + N + + S N +R++ R QK+F+ E F E +
Sbjct: 620 KDALTINEFFT-LKNAVEKQDNVSFHVNKKRKVSQKREKQKKFLYDEPTFKKEASPHSDV 678
Query: 272 MKN 280
+KN
Sbjct: 679 LKN 681
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 83 HLLKSGVTRNEMIAAITNRLHAEAMASLP 169
HLL++ T +E AA +LH + + S P
Sbjct: 1596 HLLRNSATNDETKAAFVYQLHKQGILSEP 1624
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 379 EEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 486
EEEL+ ++ N + E++KD+ +P P++ +
Sbjct: 475 EEELSDSLSNDFGIDAEKEKDENLSKPEHHPSITSV 510
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,235,477
Number of Sequences: 5004
Number of extensions: 42080
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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