Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1309
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 42 5e-04
06_01_0356 + 2557127-2557193,2557272-2557315,2557433-2557528,255... 38 0.004
06_03_0740 - 24006485-24006629,24006821-24006864,24006954-240071... 36 0.032
01_06_0465 - 29573972-29574110,29574300-29574343,29574434-295746... 35 0.042
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 30 1.2
07_03_1756 - 29239137-29239325,29239741-29240259,29240693-292408... 29 3.6
04_04_0466 + 25433678-25434007,25434118-25434176,25434345-254344... 29 3.6
02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606 29 3.6
12_01_0109 + 853043-853426,853653-853787,853866-854138 28 4.8
07_01_0436 + 3317334-3317423,3317561-3317908,3317996-3318331,331... 28 6.3
02_03_0106 + 15292869-15296138 28 6.3
09_06_0262 - 21921647-21922796,21922897-21923423 27 8.4
03_03_0107 + 14504065-14504448,14504545-14504922,14506011-145066... 27 8.4
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 143 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
H + + SL P VR+R+ LR +Q + D+EAKF+ E
Sbjct: 46 HTDVLESLEPKVRKRVEVLREIQSQHDDLEAKFFEE 81
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
KG P + ++N +LSE +QE DE LK L+DIK
Sbjct: 129 KGVPEFWLNAMKNHEILSEEIQERDEEALKYLKDIK 164
>06_01_0356 +
2557127-2557193,2557272-2557315,2557433-2557528,
2559259-2559351,2559450-2559540,2559617-2559678,
2559754-2559938,2560022-2560199,2560293-2560336,
2560440-2560635,2560728-2560745,2560955-2561005
Length = 374
Score = 38.3 bits (85), Expect = 0.004
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 143 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
H + + +L PNVR+R+ LR +Q + +IE KF+ E
Sbjct: 47 HTDVLEALSPNVRKRVEYLREIQGQHDEIELKFFEE 82
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 468 SQCKGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
+ KG P + ++ +LSE +QE DEP LK L+DIK
Sbjct: 129 ADAKGVPDFWLTAMKTNEVLSEEIQERDEPALKYLKDIK 167
>06_03_0740 -
24006485-24006629,24006821-24006864,24006954-24007122,
24007226-24007413,24007572-24007634,24007992-24008084,
24009837-24009932,24010024-24010067,24010184-24010357,
24010764-24010974
Length = 408
Score = 35.5 bits (78), Expect = 0.032
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 143 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
H + + SL P+VR+R+ L +Q + ++E KF+ E
Sbjct: 153 HVDVLESLAPSVRKRVDVLMEIQSQHDELEVKFFEE 188
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 468 SQCKGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
S+ KG P + ++N +L+E + E DE LK L+DIK
Sbjct: 205 SKEKGVPDFWLNAMKNNEILAEEIHESDEEALKYLKDIK 243
>01_06_0465 -
29573972-29574110,29574300-29574343,29574434-29574602,
29574707-29574894,29575081-29575145,29575257-29575311,
29575502-29575594,29576035-29576130,29576259-29576302,
29576419-29576431
Length = 301
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 143 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVLHSNAN-MKNFTSLFMK 301
H + + SL P VR+R+ L +Q + ++EAKF E AN K + L+ K
Sbjct: 29 HVDVLESLAPVVRKRVDVLIEIQSQHDELEAKFLEEKAALEANYQKLYGPLYSK 82
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
KG P ++ ++N +L+E + E DE LK L+DIK
Sbjct: 103 KGVPDFWLKAMKNNEILAEEIHESDEEALKYLKDIK 138
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/81 (24%), Positives = 41/81 (50%)
Frame = +1
Query: 304 RALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKG 483
RA+ ++ + E N + ++ + E+E+LARA+Q + + +++ P +P +
Sbjct: 185 RAIALSLSEEQNKGKAVDIDYNLEEDEQLARALQESLNADSPPRQNIPVENVPSEP-PRE 243
Query: 484 IPDFWYNISGMSQCSAK*CKN 546
+P + SG C+ CKN
Sbjct: 244 LPPILFASSGSRTCAG--CKN 262
>07_03_1756 -
29239137-29239325,29239741-29240259,29240693-29240800,
29240856-29241155,29241730-29241831,29243042-29243209,
29243878-29243991,29244184-29244288,29244372-29244502,
29244794-29244918,29245001-29245172,29245277-29245316,
29245636-29245722,29245803-29245868,29246412-29246510,
29246714-29246836,29247066-29247107,29247195-29247260,
29247362-29247553,29247672-29247737,29248839-29249141
Length = 1038
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 307 ALIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGE 429
A IV + EPN + N +D+T E+ A +NAA+T +
Sbjct: 685 AAIVTASEEPNGGDSANKLKDETMEDP---ATENAAMTNAD 722
>04_04_0466 +
25433678-25434007,25434118-25434176,25434345-25434426,
25435024-25435122,25435750-25435831,25436759-25436823,
25437241-25438308,25438369-25438446,25438550-25438596,
25438734-25438779,25438871-25438950,25439050-25439166,
25439842-25439923,25440156-25440281,25440415-25440489,
25440743-25440868,25441542-25441646
Length = 888
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 250 FTVKLGLNVDKLLLKSSQGADSPTNIRG*GCHRFCMKAICDGRYHFIT 107
FT + L+ + LL ++ A+ T + G C++++CDG H +T
Sbjct: 177 FTFNISLSRENLLQVAAWDANLVTPHKRMGNAGLCLESLCDGSNHNVT 224
>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
Length = 873
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +2
Query: 137 RLHAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVLHSNANMKNFTSLF 295
R+H +A+L PN++ + L EF E K L SNAN F F
Sbjct: 73 RIHKHCVANLLPNIKDAVYNADDLLDEFRWYEQKV---ALESNANQSPFMDFF 122
>12_01_0109 + 853043-853426,853653-853787,853866-854138
Length = 263
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 164 GMPSLLHEGDL*WPLSFHYGSRHFSTGVALVHHFXXXXXXLQTP 33
G+P L GD+ + L+F G+ H T VAL F Q+P
Sbjct: 129 GVPDLSEHGDV-YDLTFGLGADHPPTAVALRKEFQRIILYQQSP 171
>07_01_0436 +
3317334-3317423,3317561-3317908,3317996-3318331,
3318384-3318442,3318640-3318709,3319259-3319579
Length = 407
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -2
Query: 266 HSSAVLHCKTWPQCRQTPSEEFSRR--GFADEHSGVGM 159
H+ T+P CR + F RR +HSGVG+
Sbjct: 62 HTMLTFSRATFPSCRMLNQQNFIRRVDSILQQHSGVGV 99
>02_03_0106 + 15292869-15296138
Length = 1089
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 456 ASNGSQCKGYPRLLVQHIRNVSMLSE--MMQEHDEPILKCLQDIKV 587
AS+ S +P+L + +RN+ L E + E ++ +L CL+ + +
Sbjct: 865 ASSSSATASFPKLEILKLRNMKKLEEWSLAVEENQILLPCLKSLHI 910
>09_06_0262 - 21921647-21922796,21922897-21923423
Length = 558
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 349 CLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPM 465
CL+PW D E V +AA GE D + E M
Sbjct: 300 CLSPWSDHRSSEYYNCNVYDAAKANGEASDDKRRREQGM 338
>03_03_0107 +
14504065-14504448,14504545-14504922,14506011-14506619,
14507110-14507237,14507829-14507832
Length = 500
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 367 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNISGMSQ 522
DD EEEE+ V + + E EE +DD+ EP P V+ + D +++ + +
Sbjct: 211 DDDEEEEVMDGVFLSDVEEEEEFEDDEG-EP--KPRVRRLLDEQFDLLALEE 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,038
Number of Sequences: 37544
Number of extensions: 288844
Number of successful extensions: 892
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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