Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1309
(588 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 2e-06
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1) 29 3.7
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23) 28 4.9
SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27) 28 6.5
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0) 27 8.6
SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 8.6
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9) 27 8.6
SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 340
Score = 49.2 bits (112), Expect = 2e-06
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIKV 587
KG P + ++NV +LSEM+QEHDEPILK L D++V
Sbjct: 238 KGIPEFWLTAMKNVELLSEMIQEHDEPILKHLHDVRV 274
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Frame = +1
Query: 304 RALIVNGTYEPNDDECLNPW----RDDTEEEELARAVQNAAIT-EGEEK---KDDKAIEP 459
R I +G EP D+EC P D+ EE+E A + + ++ E EEK D++ IE
Sbjct: 171 RRNIASGGVEPTDEECRWPSDAEDEDEAEEKEEKEATEVSKLSGEVEEKVKIDDEEKIET 230
Query: 460 PMDP-NVKGIPDFW 498
P + KGIP+FW
Sbjct: 231 EQLPEDTKGIPEFW 244
>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
Length = 667
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 167 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 69
V +PS +HE D PL F +GS + T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239
>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
Length = 365
Score = 28.3 bits (60), Expect = 4.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 325 TYEPNDDECLNPWRDDTEEEEL 390
TYE D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289
>SB_56175| Best HMM Match : RRM_1 (HMM E-Value=0.27)
Length = 601
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 328 YEPNDDECLNPWRDD-TEEEELARAVQNAAITE 423
+ N D+C+N + T + EL R +QNAA TE
Sbjct: 468 HNANSDDCINNRGEPYTTKAELVRILQNAAETE 500
>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1283
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 331 EPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAI 453
E DD+ W DD E+E+ +N ++KK K I
Sbjct: 1118 EDEDDDIKESWDDDDEDEKKEDEAKNTEAAAPKKKKTLKQI 1158
>SB_35377| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1400
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = +2
Query: 197 LRTLQKEFVDIEAKFYSEV------LHSNANMKNFTS 289
L +LQK F D++A F+S+ LHSN ++ F S
Sbjct: 923 LNSLQKNFPDLQAFFWSDSQIVLNWLHSNKQLQQFQS 959
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 319 NGTYE-PNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 468
+G YE P+DD+ ++P E+E+ A ++ + +EK+D+ +E D
Sbjct: 403 DGDYEEPDDDQPVHPSHYSVPEDEITSADEDED-DDKDEKEDEDELEEKED 452
>SB_23298| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 238
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 361 WRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIP 489
W+ E R ++NA + + K+ KA++P +D + P
Sbjct: 38 WKLPIPAELTTRTIRNAQVWYQDTSKETKAVDPSLDSSSSSEP 80
>SB_10763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 376 EEEELARAVQNAAITEGEEKKDDKAIE 456
E+EE+ RAV+ + E E++K +KA E
Sbjct: 52 EQEEMERAVKESIRVEKEKRKAEKAAE 78
>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1364
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 519 RHS*YVVPKVWDTLYIGIHWRLDSLVILLFLTLSDG 412
R S ++ PK+ DT+Y ++ +D ++ ++ TL DG
Sbjct: 571 RSSHFLPPKLLDTVYSLLYEDIDEVLFIMTKTLVDG 606
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,831
Number of Sequences: 59808
Number of extensions: 340131
Number of successful extensions: 949
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -