Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1309
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical pr...    34   0.086
U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine rece...    30   1.4  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical pr...    27   7.5  
AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin ...    27   7.5  
AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.     27   9.9  
Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U40800-9|AAA81494.1|  316|Caenorhabditis elegans Hypothetical
           protein D2096.8 protein.
          Length = 316

 Score = 33.9 bits (74), Expect = 0.086
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +2

Query: 149 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEV 253
           + + +LP NV++R+ AL+ LQ + + IE+ FY  V
Sbjct: 17  DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRV 51



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 450 YRASNGS-QCKGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDI 581
           Y+A+      KG     +  +R   +++E ++EHD PIL  L D+
Sbjct: 101 YKAAEADPSAKGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDV 145


>U39472-8|AAP86618.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 32 protein.
          Length = 338

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -3

Query: 307 LAFHKEACKVFHI---CIRVQYFTVKLGLNVDKLLL 209
           + F  E C V H+   C+R  +  ++L LNVD++++
Sbjct: 102 IMFTSEECFVQHVLNSCVRFLFIAIELALNVDRIIV 137


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 355 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 468
           +P RD+  EE LA+ ++  A   GE+++ +   EP  D
Sbjct: 6   DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43


>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
           protein T24A11.1b protein.
          Length = 1006

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 361 WRDDTEEEELARAVQNAAITEGEEKK 438
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361


>Z49072-1|CAA88884.1|  938|Caenorhabditis elegans Hypothetical
           protein T24A11.1a protein.
          Length = 938

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 361 WRDDTEEEELARAVQNAAITEGEEKK 438
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357


>AF031519-1|AAC78763.1|  930|Caenorhabditis elegans myotubularin
           homologous protein 1 protein.
          Length = 930

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +1

Query: 361 WRDDTEEEELARAVQNAAITEGEEKK 438
           WR+ T+E+ +  AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361


>AC024803-1|AAL05589.4|  433|Caenorhabditis elegans Hypothetical
           protein Y51H7BM.1 protein.
          Length = 433

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 508 ICCTKSLGYPLHW 470
           +CC K LGYP +W
Sbjct: 52  LCCEKELGYPSNW 64


>Z99266-1|CAB16464.1|  292|Caenorhabditis elegans F15C11.2 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 185 RQTMEMIRNPNMFQEMMRNHDQAI 208


>Z98262-3|CAD44156.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 185 RQTMEMIRNPNMFQEMMRNHDQAI 208


>Z98262-2|CAD44155.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 167 RQTMEMIRNPNMFQEMMRNHDQAI 190


>Z98262-1|CAB10932.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 185 RQTMEMIRNPNMFQEMMRNHDQAI 208


>Z71260-4|CAD44116.1|  454|Caenorhabditis elegans Hypothetical
           protein F15C11.2c protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 185 RQTMEMIRNPNMFQEMMRNHDQAI 208


>Z71260-3|CAD44115.1|  484|Caenorhabditis elegans Hypothetical
           protein F15C11.2b protein.
          Length = 484

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 167 RQTMEMIRNPNMFQEMMRNHDQAI 190


>Z71260-2|CAA95799.1|  502|Caenorhabditis elegans Hypothetical
           protein F15C11.2a protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 489 RLLVQHIRNVSMLSEMMQEHDEPI 560
           R  ++ IRN +M  EMM+ HD+ I
Sbjct: 185 RQTMEMIRNPNMFQEMMRNHDQAI 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,638,536
Number of Sequences: 27780
Number of extensions: 247757
Number of successful extensions: 833
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)