Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1309
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta... 39 0.003
At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta... 37 0.009
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 30 1.00
At4g03620.1 68417.m00497 myosin heavy chain-related contains wea... 30 1.3
At1g63610.2 68414.m07192 expressed protein 29 1.7
At1g63610.1 68414.m07191 expressed protein 29 1.7
At2g26530.1 68415.m03183 expressed protein 29 2.3
At5g56950.1 68418.m07109 nucleosome assembly protein (NAP), puta... 29 3.0
At4g17020.2 68417.m02567 transcription factor-related contains w... 28 4.0
At4g17020.1 68417.m02568 transcription factor-related contains w... 28 4.0
At2g27810.2 68415.m03372 xanthine/uracil permease family protein... 28 4.0
At2g27810.1 68415.m03371 xanthine/uracil permease family protein... 28 4.0
At3g18390.1 68416.m02339 expressed protein contains Pfam domain,... 27 9.3
At2g27470.1 68415.m03320 CCAAT-box binding transcription factor ... 27 9.3
>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 379
Score = 38.7 bits (86), Expect = 0.003
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +2
Query: 143 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
H++ + +L P VR+R+ LR +Q ++ ++EAKF+ E
Sbjct: 40 HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEE 75
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
KG P + ++N + +E + E DE LK L+DIK
Sbjct: 124 KGVPDFWLIALKNNEITAEEITERDEGALKYLKDIK 159
>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 372
Score = 37.1 bits (82), Expect = 0.009
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 146 AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
++ + +L PNVR+R+ ALR +Q + ++EAKF E
Sbjct: 41 SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREE 75
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
KG P + ++N ++SE + E DE LK L+DIK
Sbjct: 125 KGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIK 160
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 30.3 bits (65), Expect = 1.00
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 367 DDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 486
DD +EEE + + +I E EEK D +E P D N+K +
Sbjct: 43 DDDDEEEAVSELNSLSIKE-EEKPDS-ILEEPEDSNIKAV 80
>At4g03620.1 68417.m00497 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P24733 myosin heavy chain,
striated muscle [Aequipecten irradians]
Length = 342
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 328 YEPND-DECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNV 477
+E N+ +E ++ +R + E+L + VQN A+ +EKK+D P D NV
Sbjct: 199 HELNEMEELVSDFR--AQNEKLLKKVQNCAVEHNKEKKEDIDGPGPGDNNV 247
>At1g63610.2 68414.m07192 expressed protein
Length = 341
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 385 ELARAVQNAAITEGEEKKD-DKAIEPPMDPNVKGIPDFWYNISGMSQCSAK 534
EL ++++ A+ E ++K D+ P NV G W N+SG + AK
Sbjct: 166 ELQQSLEQVALPEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAK 216
>At1g63610.1 68414.m07191 expressed protein
Length = 340
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 385 ELARAVQNAAITEGEEKKD-DKAIEPPMDPNVKGIPDFWYNISGMSQCSAK 534
EL ++++ A+ E ++K D+ P NV G W N+SG + AK
Sbjct: 165 ELQQSLEQVALPEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAK 215
>At2g26530.1 68415.m03183 expressed protein
Length = 317
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/59 (27%), Positives = 25/59 (42%)
Frame = +2
Query: 212 KEFVDIEAKFYSEVLHSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS 388
K+F+ + H+ ++K FTSLF K E +VS H + KK+
Sbjct: 238 KDFLLFRSASEGRARHNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKA 296
>At5g56950.1 68418.m07109 nucleosome assembly protein (NAP),
putative similar to nucleosome assembly protein 1
[Glycine max] GI:1161252; contains Pfam profile PF00956:
Nucleosome assembly protein (NAP)
Length = 374
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 477 KGYPRLLVQHIRNVSMLSEMMQEHDEPILKCLQDIK 584
KG P + ++N ++SE + E DE L L+DIK
Sbjct: 124 KGVPSFWLTALKNNDVISEEITERDEGALIYLKDIK 159
>At4g17020.2 68417.m02567 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 462
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
+G+T +++I + H A+ + S+P NV +IR T + +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403
>At4g17020.1 68417.m02568 transcription factor-related contains weak
similarity to Swiss-Prot:Q92759 TFIIH basal
transcription factor complex p52 subunit (Basic
transcription factor 52 kDa subunit, BTF2-p52, General
transcription factor IIH polypeptide 4) [Homo sapiens]
Length = 452
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 250
+G+T +++I + H A+ + S+P NV +IR T + +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403
>At2g27810.2 68415.m03372 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 660
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 406 NAAITEGEEKKDDKAIEPPMDPNVKGIP 489
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At2g27810.1 68415.m03371 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 709
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 406 NAAITEGEEKKDDKAIEPPMDPNVKGIP 489
+AA+T GE KD K PP P +P
Sbjct: 82 SAAVTNGETDKDKKEKPPPPPPGSVAVP 109
>At3g18390.1 68416.m02339 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 848
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/43 (23%), Positives = 20/43 (46%)
Frame = +1
Query: 310 LIVNGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKK 438
++ G +DE L PW + EE+ R V + ++++
Sbjct: 190 MLAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRR 232
>At2g27470.1 68415.m03320 CCAAT-box binding transcription factor
subunit HAP3-related contains Pfam PF00808 :
Histone-like transcription factor (CBF/NF-Y) and
archaeal histone; similar to polymerase epsilon p17
subunit (DNA polymerase epsilon subunit 3) (YB-like
protein 1) (YBL1) (NF-YB-like protein) (SP:Q9JKP7) [Mus
musculus];
Length = 275
Score = 27.1 bits (57), Expect = 9.3
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 319 NGTYEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGI 486
NG E NDDE N + +EE +N+ G E ++ + M+ N G+
Sbjct: 197 NGNDEENDDE--NTEENGNDEENEKEDEENSMEENGNESEESGNEDHSMEENGSGV 250
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,820,151
Number of Sequences: 28952
Number of extensions: 227289
Number of successful extensions: 735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -