Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1307
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 31 0.20
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.81
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha... 28 1.4
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 2.5
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 4.3
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ... 26 4.3
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 4.3
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 26 5.7
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 5.7
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.7
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 26 5.7
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 26 5.7
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 25 7.5
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 9.9
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 9.9
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 175 FMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETL 56
F G P +E+C ++ K ++G+D L A KA E+L
Sbjct: 91 FTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAKALRESL 130
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.81
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 320 SPEGHNLQESESMTSANTMLPSVSTPNSIFMSISAQS 430
SP +L S S TS+ S S+P+SI SIS+ S
Sbjct: 586 SPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSS 622
>SPBC651.03c |gyp10||GTPase activating protein
Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 373
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 134 YFLTMFLVGW*THKDDNFVVDRRLQEIKLVFHPSKVAFDCAR 259
YF +L+ W H + V RL + + HP V + CA+
Sbjct: 189 YFALSWLITWFAHDVSDISVVCRLFDFFISSHPLTVVYTCAQ 230
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 305 TINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFMS 415
TI PEG N ++ +AN M+PS+ PNS S
Sbjct: 550 TIANSRPEG-NSGSAKKAAAANPMIPSIVLPNSAMPS 585
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 358 DIRQYNATFCIDSEFYFHVNKCAVTQSPS 444
D++ N CID + H+ A T SP+
Sbjct: 214 DLKPENVLICIDQDALQHIEAPATTSSPT 242
>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 227
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 353 SMTSANTMLPSVSTPNSIFMSI--SAQSRRAQAFSKISNIRIVAFLM*STSSRPLEDR 520
S T+A+ LP+++TP+S S SRR + + ++ F+ S +S L DR
Sbjct: 164 SFTAADNTLPTITTPSSSSPDAYSSGSSRRTSNVLRQAYKKLGIFVERSLTSLGLSDR 221
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 4.3
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 369 LADVIDSDSWRLWP 328
L ++DSD+WR WP
Sbjct: 106 LKHLVDSDTWRRWP 119
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 335 NLQESESMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKI 457
++QE+ SMT + +LPS S+ + QSRRA SK+
Sbjct: 128 HVQEAASMTQLSHLLPS-----SLINLSNGQSRRAMLASKL 163
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 631 RRLQVHSSKTRDVSSRMTQTTI 566
RR ++H+ + RD+ S T TTI
Sbjct: 282 RRERLHAMRVRDIRSHSTNTTI 303
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 353 SMTSANTMLPSVSTPNSIFMSISAQSRRAQAFSKISNIR 469
S+ SA+T L S STPNS+ ++ + A+ S +R
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLR 343
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 332 HNLQESESMTSANTMLPSVSTPNSIFMSISAQSRRA 439
HN SE+++++N+ +PS++ S M S A
Sbjct: 17 HNAWGSENISNSNSAIPSITNDVSFSMEASVWKENA 52
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 180 TTLWWIVGFKKSSWSFTQAKL 242
TT +I+ FKK+SW F + K+
Sbjct: 514 TTEEYIINFKKNSWLFFRKKI 534
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +2
Query: 188 VVDRRLQEIKLVFHPSKVAFDCARSAAVTVVRFRYTCLSTINLLSPEGH 334
+VD Q+ +V P + +C + + +R + +I+LL+P+GH
Sbjct: 261 MVDDYWQDQIMVKIPDSLG-ECTQDCDLNCIRVHHKLRLSISLLNPDGH 308
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 217 LDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQY 38
LD P V + MGS +D + A E + +L + SAH+ T + + +
Sbjct: 377 LDVKDPVESPVVGIIMGSDSDLSKMKDAAVILDEFKVPYELTIVSAHR-TPDRMVTYART 435
Query: 37 EDTHGALVFIA 5
+ G V IA
Sbjct: 436 AASRGLRVIIA 446
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 332 HNLQESESMTSANTMLPSVSTPNS 403
+N +S ++ SAN PS STP S
Sbjct: 145 NNKDDSSAVKSANVSFPSSSTPPS 168
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 302 STINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFM 412
S++ L PEG +++ + + A + L +V P+SI M
Sbjct: 150 SSVCQLGPEGPSVENVQGIFQALSSLYTVIVPSSILM 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,922
Number of Sequences: 5004
Number of extensions: 60984
Number of successful extensions: 201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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