Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1307
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0979 + 9847008-9847093,9848148-9848682                           30   1.9  
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889...    28   5.9  
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    28   5.9  
10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    28   7.8  
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38...    28   7.8  
02_04_0113 - 19861904-19862197,19862338-19862496,19862580-198638...    28   7.8  

>08_01_0979 + 9847008-9847093,9848148-9848682
          Length = 206

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = -3

Query: 229 VKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRI 50
           V+D++D  +   H +  V MGS     + + + KAA+E+  D      S  K  +  L +
Sbjct: 136 VEDKIDLEEMLRHAEPRVLMGSARGLNNFEALQKAAKEVLYDESKSCDSEFKTLQSVLEL 195

Query: 49  MQ 44
           M+
Sbjct: 196 MR 197


>09_04_0447 +
           17688248-17688319,17688414-17688515,17688852-17688981,
           17689198-17689290,17689363-17689451,17689889-17689969,
           17690118-17690207,17690653-17690772,17690877-17690927,
           17691125-17691171,17691321-17691378,17691451-17691507
          Length = 329

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -1

Query: 504 RDEVDYMRKATILIFEILEKAWALRDCALIDMKIEFGVDTEGSIVLAD 361
           +++ D  R   + +F   ++        L+D K EFG   +G+I+L D
Sbjct: 171 KEDFDEARSKALSLFAYGQEVALENGLILVDTKYEFGKTADGTIMLID 218


>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +2

Query: 41  LLHNAKGFFSGLVG*CHAKVDIQSKFTGSFSYFLTMFLVGW*THKDD-NFVVDRRLQEIK 217
           L+H A+ F  GL G C A + +QS +TG   Y L  FL     ++DD N +++  L  +K
Sbjct: 426 LVHYARMF--GLAG-CFA-ICLQSMYTGDDDYILEFFLPPNCRNEDDQNALLESILARMK 481

Query: 218 LVFHPSKV 241
                 KV
Sbjct: 482 KCLRTLKV 489


>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 196 IHHKVVVFMGSPADQEHCQKIAKAARELGLDVDL 95
           +  ++VVF+GSP   E  + I K  ++  + +D+
Sbjct: 108 LSQRIVVFVGSPVKDEKLETIGKKLKKYNVSLDV 141


>05_01_0054 +
           379974-380215,380343-380556,381603-381892,382384-382560,
           382705-383481,383572-383645,383757-383819,383919-384007,
           384106-384201,384319-384978,385613-385687,386422-386492,
           386578-386635,386900-387104,387379-387869
          Length = 1193

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 176 LYGFTSRPRTLSENS*SCP*TWTGCRPSR 90
           L G T+R R++  N+ S P  W G RP +
Sbjct: 367 LGGMTNRKRSIHSNASSPPIAWVGQRPQK 395


>02_04_0113 -
           19861904-19862197,19862338-19862496,19862580-19863833,
           19864086-19864124
          Length = 581

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 247 KRNFAWVKDQLDFLKPTIHHKVVV 176
           +R   W +DQ +  +PT+HH V V
Sbjct: 493 RRKTIWDQDQTEIEEPTLHHLVTV 516


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,320,834
Number of Sequences: 37544
Number of extensions: 411334
Number of successful extensions: 991
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)