Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1307
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)                145   2e-35
SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)          145   2e-35
SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_15677| Best HMM Match : PaRep2a (HMM E-Value=3.6)                   30   2.0  
SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)          29   4.5  
SB_41792| Best HMM Match : DUF495 (HMM E-Value=1.5)                    28   7.9  
SB_19442| Best HMM Match : Beach (HMM E-Value=0)                       28   7.9  
SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)               28   7.9  
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)              28   7.9  
SB_20718| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_32780| Best HMM Match : SAICAR_synt (HMM E-Value=0)
          Length = 278

 Score =  145 bits (352), Expect = 2e-35
 Identities = 74/137 (54%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
 Frame = -1

Query: 657 FLKRNPGVPEGFRFTPPKQETFLQG*RKPRSPMVRGANHFSQIQL*RSSNGRDEVDYMRK 478
           FLKR PGV EG+RFTPPKQE FL+   +            +  ++     G+ E+D M +
Sbjct: 106 FLKRYPGVKEGYRFTPPKQEFFLKDDAQHDPFWTYEQCVEAAFEIGGRKIGKHELDIMSE 165

Query: 477 ATILIFEILEKAWALRDCALIDMKIEFGVDTE-GSIVLADVIDSDSWRLWPSGDKRLMVD 301
           + I IFEI+E+AWA  D AL+DMKIEFGV+ + G ++LADV+D+DSWR+WPSGDKRLM D
Sbjct: 166 SAIAIFEIIERAWATVDVALVDMKIEFGVNRKTGELMLADVVDNDSWRIWPSGDKRLMRD 225

Query: 300 KQVYRNLTTVTAADLAQ 250
           KQVYRNL  VT   L Q
Sbjct: 226 KQVYRNLPEVTPEALEQ 242



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 250 VKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEH 146
           VK+N+AWV  +   L       VVVFMGS +D +H
Sbjct: 243 VKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDH 277


>SB_21014| Best HMM Match : SAICAR_synt (HMM E-Value=2.2e-28)
          Length = 265

 Score =  145 bits (352), Expect = 2e-35
 Identities = 74/137 (54%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
 Frame = -1

Query: 657 FLKRNPGVPEGFRFTPPKQETFLQG*RKPRSPMVRGANHFSQIQL*RSSNGRDEVDYMRK 478
           FLKR PGV EG+RFTPPKQE FL+   +            +  ++     G+ E+D M +
Sbjct: 16  FLKRYPGVKEGYRFTPPKQEFFLKDDAQHDPFWTYEQCVEAAFEIGGRKIGKHELDIMSE 75

Query: 477 ATILIFEILEKAWALRDCALIDMKIEFGVDTE-GSIVLADVIDSDSWRLWPSGDKRLMVD 301
           + I IFEI+E+AWA  D AL+DMKIEFGV+ + G ++LADV+D+DSWR+WPSGDKRLM D
Sbjct: 76  SAIAIFEIIERAWATVDVALVDMKIEFGVNRKTGELMLADVVDNDSWRIWPSGDKRLMRD 135

Query: 300 KQVYRNLTTVTAADLAQ 250
           KQVYRNL  VT   L Q
Sbjct: 136 KQVYRNLPEVTPEALEQ 152



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/83 (44%), Positives = 53/83 (63%)
 Frame = -3

Query: 250 VKRNFAWVKDQLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKA 71
           VK+N+AWV  +   L       VVVFMGS +D +HC+KI  A +   +  DLRV+SAHK 
Sbjct: 153 VKKNYAWVAGESQKLNKHNPGHVVVFMGSASDIDHCKKIEAALKSFNVPCDLRVSSAHKG 212

Query: 70  TEETLRIMQQYEDTHGALVFIAV 2
           +E+TL++++ YE     +V IAV
Sbjct: 213 SEDTLKVLRVYEGQGVPIVIIAV 235


>SB_28047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 313 SFITGRPQSPRVRIDDIRQYNATFCIDSEFYFHVNKCAVTQSPSFLQ 453
           S++TGR Q   V+IDD     A +  D+ FY H   C ++     LQ
Sbjct: 741 SYLTGRKQF--VQIDDKSSRLADYADDTTFYAHAKPCDISDCERCLQ 785


>SB_15677| Best HMM Match : PaRep2a (HMM E-Value=3.6)
          Length = 324

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 608 QNKRRFFKDDANHDPQW 558
           + KRR F D+  HDPQW
Sbjct: 183 RTKRRAFTDETGHDPQW 199


>SB_22826| Best HMM Match : F5_F8_type_C (HMM E-Value=7.9e-09)
          Length = 1296

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 596 RFFKDDANHDPQW 558
           R F DDA HDPQW
Sbjct: 770 RAFTDDAGHDPQW 782


>SB_41792| Best HMM Match : DUF495 (HMM E-Value=1.5)
          Length = 835

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 596 RFFKDDANHDPQW 558
           R FKD+  HDPQW
Sbjct: 390 RAFKDETGHDPQW 402


>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
          Length = 796

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 453 LEKAWALRDCALIDMKIEFGVDTEGSIVLADVIDSDSWRLWP 328
           +++AW   +    D+K  FGVD +G ++  D ++  SW   P
Sbjct: 111 VQRAWQNCNRDTSDVKFTFGVDDDGMVI--DDVELPSWANTP 150


>SB_647| Best HMM Match : Fork_head (HMM E-Value=3.5e-21)
          Length = 491

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 353 SMTSANTMLPSVSTPNSIFMSISAQ 427
           S+TS   M+P V  P +++MS++A+
Sbjct: 183 SLTSGGAMMPVVVLPTNVYMSLAAK 207


>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
          Length = 1171

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 CLSTINLLSPEGHNLQESE 352
           CLS +N  SP GH L+++E
Sbjct: 133 CLSLVNYYSPYGHRLRDTE 151


>SB_20718| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -3

Query: 637 CTRRLQVHSSKTRDVSSRMTQTTIPNGQRSKSFQPNSIITVF*RSRRGRLHEKSYDSN 464
           C  R+++HSS+   + +    T     ++ KS +    +T   +     LH+  YD N
Sbjct: 29  CGGRIEIHSSQLDGIQAPPPPTPATRARKKKSMKEKKSMTTTQKMIDRLLHQIYYDPN 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,117,503
Number of Sequences: 59808
Number of extensions: 477097
Number of successful extensions: 1246
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)