Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1307
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical pr...   140   8e-34
U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical ...    29   3.0  
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla...    29   4.0  
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ...    29   4.0  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    28   5.3  

>U39848-3|AAA80690.1|  423|Caenorhabditis elegans Hypothetical
           protein B0286.3 protein.
          Length = 423

 Score =  140 bits (339), Expect = 8e-34
 Identities = 70/135 (51%), Positives = 86/135 (63%)
 Frame = -1

Query: 657 FLKRNPGVPEGFRFTPPKQETFLQG*RKPRSPMVRGANHFSQIQL*RSSNGRDEVDYMRK 478
           FLKRNPGV EGFRF   K ETF +                + + +     GR+E+  M+K
Sbjct: 112 FLKRNPGVKEGFRFNDLKLETFFKDDANDDPQWTDEQIVSNGLMIDHLKIGREEISLMKK 171

Query: 477 ATILIFEILEKAWALRDCALIDMKIEFGVDTEGSIVLADVIDSDSWRLWPSGDKRLMVDK 298
            T L+F  LEK WAL + ALIDMKIEFGV  EG I+LADVID+DSWR+WP  D+RL +DK
Sbjct: 172 MTKLVFRALEKGWALSNSALIDMKIEFGVTVEGEILLADVIDNDSWRVWPENDRRLQLDK 231

Query: 297 QVYRNLTTVTAADLA 253
           QVYR++  VT   LA
Sbjct: 232 QVYRDMKEVTEEGLA 246



 Score = 54.0 bits (124), Expect = 9e-08
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = -3

Query: 250 VKRNFAWVKD-QLDFLKPTIHHKVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHK 74
           V +N+  V D    F K      V+V MGS +D    +KI+  A++ GL+  L+V+SAHK
Sbjct: 248 VLKNYTKVMDITATFSKHQQKCHVLVIMGSGSDGVFARKISDEAKKFGLETTLKVSSAHK 307

Query: 73  ATEETLRIMQQYEDTHGALVFIAV 2
            T +TL ++  +E++    V IAV
Sbjct: 308 TTSDTLEVIADFEESGVPTVVIAV 331


>U58754-2|AAB00671.1|  391|Caenorhabditis elegans Hypothetical
           protein C39H7.4 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 669 CNWLFLKRN-PGVPEGFRFTPPKQETFL 589
           C W+    N  G+PE + FTP +++TFL
Sbjct: 314 CTWMSAPLNLGGIPEFYCFTPQERQTFL 341


>AF016436-2|AAC25898.1|  406|Caenorhabditis elegans Hypothetical
           protein F38H12.3 protein.
          Length = 406

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 288 GTPVCQPLIFYHRKATISKSQNR*HPPIQCYLLYRLRILFSCQ*VRSHAEPKLSP 452
           G P C   I + R+A I+KSQ +      C + +  R +  C  +R  +   + P
Sbjct: 46  GAPACLGCIVFFRRAVINKSQYKCWKKGNCVITFASRCVCRCCRLRKCSHVGMKP 100


>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
            protein 8 protein.
          Length = 1206

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 232  WVKDQLDFLKPTIHHKVVVFMGSPADQEHC----QKIAKAARELGLDVDLRVTSAHKATE 65
            W++D    +KPTI    V+ M   A  + C     ++  + R + L+V+  +       +
Sbjct: 860  WLRDGSKVVKPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVD 919

Query: 64   ETLRIMQQYEDTHGALV 14
            +  R+M+QY +    LV
Sbjct: 920  QMTRMMEQYANNLEKLV 936


>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
            guanyly cyclase protein.
          Length = 1152

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -3

Query: 232  WVKDQLDFLKPTIHHKVVVFMGSPADQEHC----QKIAKAARELGLDVDLRVTSAHKATE 65
            W++D    +KPTI    V+ M   A  + C     ++  + R + L+V+  +       +
Sbjct: 806  WLRDGSKVVKPTIPQNKVLNMDLSALIQDCWNTTPEMRPSLRRIKLNVETYLNIKGSLVD 865

Query: 64   ETLRIMQQYEDTHGALV 14
            +  R+M+QY +    LV
Sbjct: 866  QMTRMMEQYANNLEKLV 882


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 363  DVIDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADL 256
            ++   D W LWP  D R +V  ++   L+ + A DL
Sbjct: 1861 EIYIEDGWNLWPD-DVRTVVGSKMSSELSRIVARDL 1895


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,282,212
Number of Sequences: 27780
Number of extensions: 355438
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)