Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1307
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21110.1 68416.m02668 phosphoribosylamidoimidazole-succinocar...    36   0.032
At5g40480.1 68418.m04909 expressed protein ; expression supporte...    29   2.1  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    29   2.8  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    29   3.7  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    28   6.5  
At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin (...    28   6.5  
At5g12970.1 68418.m01487 C2 domain-containing protein contains I...    27   8.6  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    27   8.6  
At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger) fa...    27   8.6  

>At3g21110.1 68416.m02668
           phosphoribosylamidoimidazole-succinocarboxamide synthase
           / SAICAR synthetase (PUR7) identical to
           phosphoribosylamidoimidazole-succinocarboxamide
           synthase, chloroplast [precursor] SP:P38025 from
           [Arabidopsis thaliana]
          Length = 411

 Score = 35.5 bits (78), Expect = 0.032
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 498 EVDYMRKATILIFEILEKAWALRDCALIDMKIEFGVDTEGSIVLADVIDS-DSWRLWPSG 322
           E D      + +FE  +         L+D K EFG  ++GSI+L D I + DS R W +G
Sbjct: 262 EFDEASMKALSLFEFGQGVAKKHGLILVDTKYEFGRSSDGSILLIDEIHTPDSSRYWLAG 321


>At5g40480.1 68418.m04909 expressed protein ; expression supported
           by MPSS
          Length = 1919

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +1

Query: 313 SFITGRPQSPRVRIDDIRQYNATF-CIDSEFYFHVNKCAVTQSPSFLQDFKY*NRSFSHV 489
           SF+     S  + +D++R  +++  C  +  Y       V Q+ +  ++F Y ++S S  
Sbjct: 604 SFVIVNATSEMMMLDELRSMDSSPPCSRASIYTASTGRTVLQA-TLAKEFHYFDKSLSES 662

Query: 490 VDLVA--TVRRPL*LNLAEMICSSDHWGSWF 576
           +DL A  T+   L L++ +    + H G WF
Sbjct: 663 IDLKATLTIGAYLPLSVRQDSDGNHHGGYWF 693


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 613 SSKTRDVSSRMTQTTIPNGQRSKSFQPNSIIT 518
           S K +  + R TQ  +P G RS SF P+++ T
Sbjct: 7   SPKQKFCARRQTQRWLPEGDRSSSFTPSTMET 38


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 232 KQSCV*LC*ISCSHRCEVPVHLFVNH*SFITGRPQSPRVRIDDIRQYNATF-CIDSEF 402
           KQ C  +  + C+   E  VH    H  F+T +P   ++R    +    TF CI+ +F
Sbjct: 504 KQGCKFMLHVQCATTSEPLVHESHRHPLFLTSKP-GEKIRCSVCKDSEETFNCIECDF 560


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
            similar to CLIP-associating protein CLASP2 (GI:13508651)
            [Rattus norvegicus]
          Length = 1439

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 357  IDSDSWRLWPSGDKRLMVDKQVYRNLTTVTAADLAQSNAT 238
            IDSDS R W S  +  M+   V +N+++ T   L Q+  T
Sbjct: 1073 IDSDSGRKWSSSQEPTMITGGVGQNVSSGTQEKLYQNVRT 1112


>At1g35720.1 68414.m04440 annexin 1 (ANN1) identical to annexin
           (AnnAt1) [Arabidopsis thaliana] GI:4959106
          Length = 317

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 163 PADQEHCQKIAKAARELGLDVDLRVTS-AHKATEETLRIMQQYEDTHG 23
           PA  +  +++  A    G + DL ++  AH++ E+   I Q Y +T+G
Sbjct: 11  PAPSDDAEQLRTAFEGWGTNEDLIISILAHRSAEQRKVIRQAYHETYG 58


>At5g12970.1 68418.m01487 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 769

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +2

Query: 218 LVFHPSKVAFDCARSAAVTVVRFRYTCLSTINLLSPEGHNLQESESMTSANTMLPSVSTP 397
           LVFHPS +     +      +  R+TCLS IN+L      L          ++L   S  
Sbjct: 470 LVFHPSGI-----KKTGEIQLAVRFTCLSLINMLHMYSQPLLPKMHYIHPLSVLQLDSLR 524

Query: 398 NSIFMSISAQSRRAQ 442
           +     +SA+  RA+
Sbjct: 525 HQAMNIVSARLNRAE 539


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -3

Query: 187 KVVVFMGSPADQEHCQKIAKAARELGLDVDLRVTSAHKATEETLRIMQQYEDTHGALVFI 8
           +V + MGS  D    +  AK     G+  ++++ SAH+ T E +        + G  V I
Sbjct: 476 RVAIIMGSDTDLPVMKDAAKILDLFGVTHEVKIVSAHR-TPEMMYTYATSAHSRGVQVII 534

Query: 7   A 5
           A
Sbjct: 535 A 535


>At2g22680.1 68415.m02688 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles PF00097: Zinc
           finger, C3HC4 type (RING finger), PF00092: von
           Willebrand factor type A domain
          Length = 683

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 254 ARSAAVTVVRFRYTCLSTINLLSPEGHNLQESESMTSANTMLPSVSTPNSIFMSIS--AQ 427
           +RS  +  VR RY   +T  L +PE   L     +T  ++  P++S   ++ +S    A+
Sbjct: 525 SRSHKIMTVRSRYVDPTTQELRNPEDRALLIPTPLTVRSSSNPNISRLRNLHVSTRAVAE 584

Query: 428 SRR 436
           SRR
Sbjct: 585 SRR 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,425,608
Number of Sequences: 28952
Number of extensions: 329162
Number of successful extensions: 861
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)