Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1306
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.51 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.67 
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   6.2  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.2  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.2  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   8.2  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 164 SGCGRCRVWSMFVRYVRFSELVF*YNAASKMYIF 265
           +GCG+  VW  +VR+V F E    +     +Y++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 347 ARKIRGRPENAGPDPVRNVRRFSRV 273
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -3

Query: 593 GYLKRVIVTPAVYPRLLEFLHVDIQSTGRNHIASTPA 483
           G+++R+ V    YP LLE+L++ + S+ +  ++++ A
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSSYKYLLSNSGA 112


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 201 TNIDQTRHRPHPLPVQTRHAPV 136
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 89  FPYLHYSID*RLFTLETCCGYGYEPARHL 3
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 249 QKCIYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNW 428
           Q  +YL      S Y +D  RTR++ PSA + +    ++       R   T V  S +  
Sbjct: 133 QYLVYLTTLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETI 192

Query: 429 HGQ 437
            G+
Sbjct: 193 TGE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,980,803
Number of Sequences: 5004
Number of extensions: 61539
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)