Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1306
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.53
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.92
10_07_0134 + 13289641-13290216,13290435-13290914 30 1.6
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.6
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 30 2.1
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 4.9
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.9
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.6
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 28 8.6
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 8.6
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -2
Query: 180 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 1
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 201 TNIDQTRH------RPHPLPVQTRHAPVLRANP 121
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>10_07_0134 + 13289641-13290216,13290435-13290914
Length = 351
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = -2
Query: 327 AGERGSGSSPKRKTIFASVILNIYIFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPVQTR 148
A G GSS +++ + LN+ EA+ +N + + N+D +R P P P
Sbjct: 201 AAAGGGGSSCRQEAASELINLNVKETEASC---SNRSENSSEINLDISRPAPPPPPPPAN 257
Query: 147 HAPVLRANPY 118
+PV R P+
Sbjct: 258 ESPVNRGIPF 267
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 611 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTGRNHI 498
LDDE YL R V + RLL+F++VD STG + I
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTGSSVI 317
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 587 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGK 715
G+ PR + D EW N PT+ ++ + +PRE Q+ K
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLK 1435
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 171 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 82
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 165 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 52
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 177 RPHPLPVQTRHAPVLRANPYSEVTDP 100
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 203 ARTSTRPGTGRIRFPSKPDTPRSSE 129
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -2
Query: 219 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHL 46
+K + N+D RP P PV LRA PY P + + L + L ++++
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYV 60
Query: 45 GDLLR 31
D R
Sbjct: 61 NDCPR 65
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 191 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 105
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,998,387
Number of Sequences: 37544
Number of extensions: 466361
Number of successful extensions: 1378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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