Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1306
(721 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 27 0.18
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 25 0.54
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.1
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 5.1
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 5.1
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 5.1
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 5.1
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 5.1
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 5.1
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 5.1
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 21 8.9
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 27.1 bits (57), Expect = 0.18
Identities = 25/100 (25%), Positives = 40/100 (40%)
Frame = -2
Query: 456 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRPYG*EDPRKAGERGSGSSPKRKTIFA 277
L+ R R S E+ SY+ K R Y ++ ++ K + I +
Sbjct: 30 LEERTSRKRYSRSREREQNSYK------NEKEYRKYRERSKERSRDKRERERSKERKIIS 83
Query: 276 SVILNIYIFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 157
S + N YI + Y N N+ + NI+ P P+PV
Sbjct: 84 S-LSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPV 122
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 25.4 bits (53), Expect = 0.54
Identities = 24/100 (24%), Positives = 40/100 (40%)
Frame = -2
Query: 456 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRPYG*EDPRKAGERGSGSSPKRKTIFA 277
L+ R R S E++SY+ R Y ++ ++ K + I +
Sbjct: 268 LEERTSRKRYSRSREREQKSYK------NENSYRKYRETSKERSRDKTERERSKERKIIS 321
Query: 276 SVILNIYIFEAALY*NTNSLKRT*RTNIDQTRHRPHPLPV 157
S + N YI + Y N N+ + NI+ P P+PV
Sbjct: 322 S-LSNNYISNISNYNNNNNYNKKLYYNINYIEQIPVPVPV 360
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 163 KRMRPVPGLVDVRALCSF*RVSILI*CGLKN 255
K +RPV DV +C ++S LI LKN
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKN 72
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.2 bits (45), Expect = 5.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 163 KRMRPVPGLVDVRALCSF*RVSILI*CGLKN 255
K +RPV DV +C ++S LI LKN
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKN 72
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 398 RTESCRSRTKRNRHD 354
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 21.4 bits (43), Expect = 8.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 550 ACLNFFTLTFRALGEITLRQH 488
A LNFF T +GE R H
Sbjct: 40 ALLNFFVATSPVIGEPCQRVH 60
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,184
Number of Sequences: 438
Number of extensions: 4771
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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