Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1305
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 34 0.11
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 30 1.8
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.8
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 29 2.3
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 29 2.3
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 28 5.4
08_01_1048 + 10624027-10624575,10625332-10625522,10626044-106265... 27 9.4
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 9.4
>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +3
Query: 369 GSQMPRHLISDAHEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLA*L*SGIVRRHER 548
G+ PR + D EW N PT+ ++ + +PRE Q+ K + I+ E
Sbjct: 1393 GNCAPRTVECDEGEWYNNFPTIDENHVQRNKPREEQIFQQKLKPAIF------ILNSDES 1446
Query: 549 CSISGR 566
CS+ G+
Sbjct: 1447 CSLKGK 1452
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R + S ++ +R ++ +
Sbjct: 515 NKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAF 574
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
+ HW G+D M F + N+N V +++Q
Sbjct: 575 L---HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 604
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 393 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 292
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R + S ++ +R ++ +
Sbjct: 356 NKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAF 415
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
+ HW G+D M F + N+N V +++Q
Sbjct: 416 L---HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 445
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R + S ++ +R ++ +
Sbjct: 335 NKNSSYFVEWIPNNVKSSVCDIPPRGLSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAF 394
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
+ HW G+D M F + N+N V +++Q
Sbjct: 395 L---HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/85 (21%), Positives = 34/85 (40%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R + + ++ +R ++ +
Sbjct: 335 NKNSSYFVEWIPNNVKSSVCDIPPRGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAF 394
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN 312
+ HW G+D M F + N+N
Sbjct: 395 L---HWYTGEGMDEMEFTEAESNMN 416
>08_01_1048 +
10624027-10624575,10625332-10625522,10626044-10626539,
10626664-10626749,10626853-10627033
Length = 500
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 196 SAQNWHGQGESDCLIKTKHWMALA 267
S N +G+ DCL+ +HW +A
Sbjct: 306 SFANMRSRGDDDCLLPLEHWAEIA 329
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 238 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 134
LD+ IP+ R E + E R I+P + P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,787,040
Number of Sequences: 37544
Number of extensions: 380559
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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