Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1305
(635 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X16826-1|CAA34726.1| 435|Drosophila melanogaster 60C beta tubul... 29 4.0
M22335-1|AAA28993.1| 454|Drosophila melanogaster protein ( D.me... 29 4.0
M20419-1|AAA28989.1| 447|Drosophila melanogaster protein ( D.me... 29 4.0
BT003242-1|AAO24999.1| 447|Drosophila melanogaster LD43681p pro... 29 4.0
AY118611-1|AAM49980.1| 457|Drosophila melanogaster LP10436p pro... 29 4.0
AE014297-4213|AAF56770.2| 522|Drosophila melanogaster CG4869-PA... 29 4.0
AE013599-2894|AAN16132.2| 375|Drosophila melanogaster CG9277-PD... 29 4.0
AE013599-2893|AAN16133.1| 375|Drosophila melanogaster CG9277-PC... 29 4.0
AE013599-2892|AAF57556.1| 456|Drosophila melanogaster CG9277-PA... 29 4.0
AE013599-2891|AAF57555.1| 447|Drosophila melanogaster CG9277-PB... 29 4.0
AE013599-2148|AAM70939.1| 2403|Drosophila melanogaster CG18255-P... 29 4.0
AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-P... 29 4.0
AE013599-2142|AAM70937.1| 4463|Drosophila melanogaster CG18255-P... 29 4.0
AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-P... 29 4.0
AE014298-259|AAF45667.1| 216|Drosophila melanogaster CG14811-PA... 29 5.3
BT015991-1|AAV36876.1| 454|Drosophila melanogaster RE53159p pro... 28 9.2
AY058593-1|AAL13822.1| 767|Drosophila melanogaster LD28817p pro... 28 9.2
AE014297-1398|AAF54712.1| 767|Drosophila melanogaster CG6962-PA... 28 9.2
AE013599-3851|AAF47193.2| 454|Drosophila melanogaster CG3401-PA... 28 9.2
>X16826-1|CAA34726.1| 435|Drosophila melanogaster 60C beta tubulin
protein.
Length = 435
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F TTA+Q + Q +
Sbjct: 322 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGN-----TTAIQELFKRISEQFSAMF 376
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 377 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 411
>M22335-1|AAA28993.1| 454|Drosophila melanogaster protein (
D.melanogaster beta-3 tubulin gene, exons 2, 3 and 4. ).
Length = 454
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F TTA+Q + Q +
Sbjct: 341 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSSTFIGN-----TTAIQELFKRISEQFSAMF 395
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 396 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 430
>M20419-1|AAA28989.1| 447|Drosophila melanogaster protein (
D.melanogaster beta-1 tubulin mRNA, complete cds. ).
Length = 447
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>BT003242-1|AAO24999.1| 447|Drosophila melanogaster LD43681p
protein.
Length = 447
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>AY118611-1|AAM49980.1| 457|Drosophila melanogaster LP10436p
protein.
Length = 457
Score = 29.5 bits (63), Expect = 4.0
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
S+ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 SKNSSYFVEWIPNNVKVAVCDIPPRGLKMSATFIGNS-----TAIQEIFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN 312
K HW G+D M F + N+N
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMN 416
>AE014297-4213|AAF56770.2| 522|Drosophila melanogaster CG4869-PA
protein.
Length = 522
Score = 29.5 bits (63), Expect = 4.0
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
S+ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 400 SKNSSYFVEWIPNNVKVAVCDIPPRGLKMSATFIGNS-----TAIQEIFKRISEQFTAMF 454
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN 312
K HW G+D M F + N+N
Sbjct: 455 RRKAFLHWYTGEGMDEMEFTEAESNMN 481
>AE013599-2894|AAN16132.2| 375|Drosophila melanogaster CG9277-PD,
isoform D protein.
Length = 375
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 263 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 317
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 318 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 352
>AE013599-2893|AAN16133.1| 375|Drosophila melanogaster CG9277-PC,
isoform C protein.
Length = 375
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 263 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 317
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 318 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 352
>AE013599-2892|AAF57556.1| 456|Drosophila melanogaster CG9277-PA,
isoform A protein.
Length = 456
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 344 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 398
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 399 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 433
>AE013599-2891|AAF57555.1| 447|Drosophila melanogaster CG9277-PB,
isoform B protein.
Length = 447
Score = 29.5 bits (63), Expect = 4.0
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>AE013599-2148|AAM70939.1| 2403|Drosophila melanogaster CG18255-PE,
isoform E protein.
Length = 2403
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 199 LTVERR--SYRIVPIAHETKPTRPYG*EDPRKAGERGS 92
+TVE R + RI P E +P RP G E+P AGE G+
Sbjct: 1433 ITVEPRVRAPRISP-PREGRPPRPSGDEEPAAAGEEGA 1469
>AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-PD,
isoform D protein.
Length = 7210
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 199 LTVERR--SYRIVPIAHETKPTRPYG*EDPRKAGERGS 92
+TVE R + RI P E +P RP G E+P AGE G+
Sbjct: 6240 ITVEPRVRAPRISP-PREGRPPRPSGDEEPAAAGEEGA 6276
>AE013599-2142|AAM70937.1| 4463|Drosophila melanogaster CG18255-PC,
isoform C protein.
Length = 4463
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 199 LTVERR--SYRIVPIAHETKPTRPYG*EDPRKAGERGS 92
+TVE R + RI P E +P RP G E+P AGE G+
Sbjct: 1433 ITVEPRVRAPRISP-PREGRPPRPSGDEEPAAAGEEGA 1469
>AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-PA,
isoform A protein.
Length = 9270
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -2
Query: 199 LTVERR--SYRIVPIAHETKPTRPYG*EDPRKAGERGS 92
+TVE R + RI P E +P RP G E+P AGE G+
Sbjct: 6240 ITVEPRVRAPRISP-PREGRPPRPSGDEEPAAAGEEGA 6276
>AE014298-259|AAF45667.1| 216|Drosophila melanogaster CG14811-PA
protein.
Length = 216
Score = 29.1 bits (62), Expect = 5.3
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 564 SHLCYTSHVSLQCQTRVKLTGSSFPADSPKPVPLAVVSLDSR 439
S C + S+Q R+ +T + FP D PKP P SL R
Sbjct: 118 SQACNPTSRSMQPPRRISIT-NEFPDDQPKPAPKRRYSLVRR 158
>BT015991-1|AAV36876.1| 454|Drosophila melanogaster RE53159p
protein.
Length = 454
Score = 28.3 bits (60), Expect = 9.2
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P + + +S +F TTA+Q + Q +
Sbjct: 341 NKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGN-----TTAIQELFKRISEQFSAMF 395
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 396 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 430
>AY058593-1|AAL13822.1| 767|Drosophila melanogaster LD28817p
protein.
Length = 767
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 437 RDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTF 303
R G L N + ++ T+ TLRE +P R C++ F TF
Sbjct: 536 RSEGFLKNFYKKIFGECTQEEVTLREFSRIPEVLRQCIDAFCRTF 580
>AE014297-1398|AAF54712.1| 767|Drosophila melanogaster CG6962-PA
protein.
Length = 767
Score = 28.3 bits (60), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 437 RDSGNLVNPFMRVTN*MTRHLATLRES*LLPPFTRACLNFFTLTF 303
R G L N + ++ T+ TLRE +P R C++ F TF
Sbjct: 536 RSEGFLKNFYKKIFGECTQEEVTLREFSRIPEVLRQCIDAFCRTF 580
>AE013599-3851|AAF47193.2| 454|Drosophila melanogaster CG3401-PA
protein.
Length = 454
Score = 28.3 bits (60), Expect = 9.2
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P + + +S +F TTA+Q + Q +
Sbjct: 341 NKNSSYFVEWIPNNVKTAVCDIPPKGLKMSSTFIGN-----TTAIQELFKRISEQFSAMF 395
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 396 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 430
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,068,342
Number of Sequences: 53049
Number of extensions: 608682
Number of successful extensions: 1661
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2662347150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -