Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1305
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 31 0.69
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 31 0.69
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 2.8
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 29 3.7
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 28 4.9
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 28 4.9
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 31.1 bits (67), Expect = 0.69
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY DWI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 31.1 bits (67), Expect = 0.69
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY DWI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVDWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 29.9 bits (64), Expect = 1.6
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R V + ++ +R ++ +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGVKMAATFVGNSTAIQELFKRISEQFTAMFRRKAF 394
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
+ HW G+D M F + N+N V +++Q
Sbjct: 395 L---HWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKV-VSVSFRARSARFCTTAVQRSAQNWHGQGESDC 234
++ SSY +WI V D+P R + +S +F S TA+Q + Q +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMSATFIGNS-----TAIQELFKRISEQFTAMF 389
Query: 235 LIKT-KHWMALAGVDAM*FLPSALNVN--VKKFKQ 330
K HW G+D M F + N+N V +++Q
Sbjct: 390 RRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 424
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 53 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 193
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 134 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGNPTV*LKQSIGWPSRVLTQCDFCPVL 301
++ R +F + H + PP G++R D GN + W +V++ DF +L
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN-------DMDWCMQVISSDDFREIL 459
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/85 (21%), Positives = 34/85 (40%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R + + ++ +R ++ +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAF 394
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN 312
+ HW G+D M F + N+N
Sbjct: 395 L---HWYTGEGMDEMEFTEAESNMN 416
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 312 VDIQSTGQKSHCVNTREGHPML 247
VD+ ST Q HC+ HP+L
Sbjct: 1289 VDLVSTDQIRHCIEANSSHPLL 1310
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/85 (21%), Positives = 34/85 (40%)
Frame = +1
Query: 58 SRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNWHGQGESDCL 237
++ SSY +WI V D+P R + + ++ +R ++ +
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFVGNSTAIQELFKRISEQFTAMFRRKAF 394
Query: 238 IKTKHWMALAGVDAM*FLPSALNVN 312
+ HW G+D M F + N+N
Sbjct: 395 L---HWYTGEGMDEMEFTEAESNMN 416
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,540,801
Number of Sequences: 27780
Number of extensions: 299196
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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