Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1303
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.68 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.68 
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   2.1  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.7  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.6  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   6.3  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.3  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   8.3  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 300 SGCGRCRVWSMFVRYVRFSE 359
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 484 ARKIRGRPENAGPDPVRNVRRFSRV 410
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 542 NGGRTESCRSRRNETDTTYG*EDPRKAGERGSGSSPKRK-TIFASVILNI 396
           NGG  +   S    +    G ++    G  GSGSS  RK T F++ + N+
Sbjct: 11  NGGTNQGMESSSANSPEMNGTQNSMSVGMSGSGSSQNRKITQFSNKLYNM 60


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 171 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 43
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = -1

Query: 585 SRIPLVRASSELTVERRSYRIVPIAQKRNRHDLRLGRSAEGRRTRVRIQSET*DDFRECH 406
           SRI    A+S L      YR+     K N  DLR G S   +R+ + +  +   DF +  
Sbjct: 248 SRIYPYAAASNLRNLLSLYRLPNCFGKLNSFDLRKGSSTSLKRSSMYLARKENQDFDDQS 307

Query: 405 IKYIQFLRPHYIKI 364
            + +  ++  Y ++
Sbjct: 308 TQILNHIKTAYYEL 321


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 271 LRANPYPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 140
           L +     L+     +P+   S+D R+F LE+  GY  EP   L
Sbjct: 144 LNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 337 TNIDQTRHRPHPLPVQTRHAPV 272
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
 Frame = +2

Query: 395 IYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKSCRFRFCAI-----GTILYDRRSTVSSE 559
           +YL      S Y +D  RTR++ PSA + +  +       +      T++Y+ R T++ E
Sbjct: 136 VYLTTLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETITGE 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,197
Number of Sequences: 5004
Number of extensions: 62906
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)