Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1303
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 35 0.076
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 31 1.2
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 29 2.8
07_03_0078 - 13147741-13148913 28 6.6
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 6.6
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 8.7
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 8.7
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 8.7
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 28 8.7
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 8.7
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 34.7 bits (76), Expect = 0.076
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Frame = -3
Query: 337 TNIDQTRH------RPHPLPVQTRHAPVLRANPYPKL 245
T IDQ H + H +PVQ H+PVL+ NP P++
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNPSPRI 360
>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 393 QFLRPHYIKILTR*NEHNARTSTRP-GTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLT 217
+++ H+IK L NE + TS RP GT R + D R +E +L+ YGSN L
Sbjct: 911 EYIIRHHIKELEALNEASFGTSRRPSGTER----ALNDPLRDNEGMLVDEYGSNTGFHLP 966
Query: 216 YII 208
+I
Sbjct: 967 NLI 969
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 313 RPHPLPVQTRHAPVLRANPYP 251
RPH P+ T H P+ A P+P
Sbjct: 398 RPHRFPLLTEHPPIWTAQPHP 418
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 444 SGPAFSGLPRIFLAVSRVGFVSARSARF 527
SGP + G R+F+A+S +G ++ A +
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSLALY 250
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 6.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 216 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 91
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 339 ARTSTRPGTGRIRFPSKPDTPRSSE 265
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +3
Query: 528 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 656
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +3
Query: 528 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 656
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -1
Query: 339 ARTSTRPGTGRIRFPSKPDTPRSSEPILIRSYGS 238
A T PG FPSK +T SE L SY S
Sbjct: 546 ATMGTAPGLVSSSFPSKTETSSGSEYFLEHSYSS 579
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 169 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSI 38
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,331
Number of Sequences: 37544
Number of extensions: 484958
Number of successful extensions: 1688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1688
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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