Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1303
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   9.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   9.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   9.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.0  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 397
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +2

Query: 299 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 397
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = -3

Query: 481 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 302
           RK R   +    D  R  R  S+    I ++    ++ N N+ K+    NI+     P P
Sbjct: 57  RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114

Query: 301 LPVQTRHAPVLRANPYPK 248
           +P+     PV   N  P+
Sbjct: 115 VPIP---VPVYYGNFLPR 129


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 481 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 302
           RK R   +    D  R  R  S+    I ++    ++ N N+ K+    NI+     P P
Sbjct: 57  RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114

Query: 301 LPV 293
           +PV
Sbjct: 115 VPV 117


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 481 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 302
           RK R   +    D  R  R  S+    I ++    ++ N N+ K+    NI+     P P
Sbjct: 57  RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114

Query: 301 LPV 293
           +PV
Sbjct: 115 VPV 117


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 481 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 302
           RK R   +    D  R  R  S+    I ++    ++ N N+ K+    NI+     P P
Sbjct: 57  RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 114

Query: 301 LPV 293
           +PV
Sbjct: 115 VPV 117


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 481 RKIRGRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNIDQTRHRPHP 302
           RK R   +    D  R  R  S+    I ++    ++ N N+ K+    NI+     P P
Sbjct: 290 RKYRETSKERSRD--RKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNINYIEQIPVP 347

Query: 301 LPV 293
           +PV
Sbjct: 348 VPV 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,920
Number of Sequences: 438
Number of extensions: 4865
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)