Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm1303
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59510.1 68418.m07458 expressed protein 30 1.4
At2g24980.1 68415.m02987 proline-rich extensin-like family prote... 30 1.4
At1g07220.1 68414.m00768 expressed protein 29 3.1
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S... 29 4.1
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str... 29 4.1
At2g45560.1 68415.m05665 cytochrome P450 family protein 29 4.1
At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putativ... 29 4.1
At2g19150.1 68415.m02235 pectinesterase family protein contains ... 29 4.1
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative... 28 5.5
At5g06630.1 68418.m00749 proline-rich extensin-like family prote... 28 5.5
At4g21800.2 68417.m03154 ATP-binding family protein contains Pfa... 28 5.5
At4g21800.1 68417.m03153 ATP-binding family protein contains Pfa... 28 5.5
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 5.5
At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related... 28 7.2
At2g46320.1 68415.m05761 mitochondrial substrate carrier family ... 28 7.2
At5g35190.1 68418.m04170 proline-rich extensin-like family prote... 27 9.6
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 9.6
>At5g59510.1 68418.m07458 expressed protein
Length = 144
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/65 (36%), Positives = 34/65 (52%)
Frame = -1
Query: 333 TSTRPGTGRIRFPSKPDTPRSSEPILIRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTN 154
+S++P R F +KP + SSEPI RS+ + PTS LS GS+ P T+
Sbjct: 38 SSSKPVFTR-SFSTKPTSYSSSEPIFRRSFSAK-PTSSKSPFLSRSGSTKC-PVDTSSTS 94
Query: 153 RRDIS 139
+ IS
Sbjct: 95 KCSIS 99
>At2g24980.1 68415.m02987 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 559
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -3
Query: 319 RHRPHPLPVQTRHAPVLRANPYPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 140
++ PHP P P P PK+ + PY++ S ++ Y P ++
Sbjct: 44 KYAPHPKPYVKSSPPPQYYTPSPKVNYKSPPPPYVYSSPPPPYYSPSPKVDYKSPPPPYV 103
Query: 139 HVHPSPEF---SRSAESIRTPPQMRCSSRSEPY 50
+ P P + S + PP SS PY
Sbjct: 104 YSSPPPPYYSPSPKVDYKSPPPPYVYSSPPPPY 136
>At1g07220.1 68414.m00768 expressed protein
Length = 507
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -3
Query: 247 LRIQFADFP-YLHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRC 71
L + F F L Y +D + +T G+ EP H+ P FS + + + ++C
Sbjct: 26 LALSFFSFTALLFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQC 84
Query: 70 SSRSEPY 50
S S PY
Sbjct: 85 SYFSCPY 91
>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
roibosomal protein L4, Arabidopsis thaliana,
EMBL:CAA79104
Length = 407
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 711 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 601
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 33 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69
>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
similarity to 60S ribosomal protein L1 GB:P49691
Length = 406
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = -1
Query: 711 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 601
++T V P ++ F+H I + ++ + V+ + GH+ +
Sbjct: 32 VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68
>At2g45560.1 68415.m05665 cytochrome P450 family protein
Length = 512
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 292 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 450
GR+ + G+GR C LA ++M LY F+ L K VL LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487
>At2g40490.1 68415.m04997 uroporphyrinogen decarboxylase, putative /
UPD, putative similar to uroporphyrinogen decarboxylase
(chloroplast) from Nicotiana tabacum [SP|Q42967],
Hordeum vulgare [SP|Q42855], Zea mays [SP|O81220];
contains Pfam domain uroporphyrinogen decarboxylase
(URO-D) PF01208
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 458 LRPSADLPSRKSCRFRFCAI-GTILYDRRSTVSSELARTRGIR 583
+ P L S KSCR C++ GT + +R+ + +SE R ++
Sbjct: 19 ISPRKSLSSTKSCRIVRCSVEGTTVTERKVSATSEPLLLRAVK 61
>At2g19150.1 68415.m02235 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 339
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 78 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 179
I GG+ + ++ EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217
>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
strong similarity to probable NADP-dependent
oxidoreductase (zeta-crystallin homolog) P1
[SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
Arabidopsis thaliana
Length = 239
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 453 RVRIQSET*DDFRECHIKYIQFLRPH 376
R+RIQ DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197
>At5g06630.1 68418.m00749 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 440
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Frame = -3
Query: 319 RHRPHPLPVQTRHAPVLRANPYPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 140
++ PHP P P P PK+ + PY++ S ++ Y P ++
Sbjct: 50 KYAPHPKPYVYSSPPPPYYTPSPKVNYKSPPPPYVYNSPPPPYYSPSPKVYYKSPPPPYV 109
Query: 139 HVHPSPEFSRSAESI--RTPPQMRCSSRSEP--YLPS 41
+ P P + + + ++PP S P Y PS
Sbjct: 110 YSSPPPPYYSPSPKVYYKSPPPPYVYSSPPPLYYSPS 146
>At4g21800.2 68417.m03154 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 379
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 273 SSEPILIRSYGSNLPTSLTYIILSTRGSSP 184
+S I+ ++ S PT +TY++ + R SSP
Sbjct: 156 ASGAIITEAFASTFPTVVTYVVDTPRSSSP 185
>At4g21800.1 68417.m03153 ATP-binding family protein contains Pfam
domain, PF03029: Conserved hypothetical ATP binding
protein
Length = 379
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 273 SSEPILIRSYGSNLPTSLTYIILSTRGSSP 184
+S I+ ++ S PT +TY++ + R SSP
Sbjct: 156 ASGAIITEAFASTFPTVVTYVVDTPRSSSP 185
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 103 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 5
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At4g00270.1 68417.m00034 DNA-binding storekeeper protein-related
contains similarity to storekeeper protein [Solanum
tuberosum] gi|14268476|emb|CAC39398; contains PF04504:
Protein of unknown function, DUF573
Length = 302
Score = 27.9 bits (59), Expect = 7.2
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +2
Query: 146 SRRFVPIS--AAGLQGEEPLVDRIM*VREVGKLDP*LRIRIGSEDRGVSGLDG-KRMRPV 316
S R +P S AA + EE + ++ ++ KLDP L +RI +E+ +S L G R
Sbjct: 27 SPRNIPSSKRAASVAEEETMKKKMKMKKKKKKLDPPLIVRIWNEEDELSILKGLVDYRAK 86
Query: 317 PGL---VDVRALCSF*RVSIL 370
G +D A CSF SI+
Sbjct: 87 TGFNPKIDWDAFCSFLGSSIV 107
>At2g46320.1 68415.m05761 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 361
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 437 DWIRTRVLRPSADLPSRKSCRFR-FCAIGTILYDRRSTVSSELARTRG 577
D ++TR+ +A +P + SCR F T+++D RS + + R G
Sbjct: 43 DVVKTRLQAQAAGVPYQGSCRLGCFDTNSTLVHDLRSNSAPGMCRITG 90
>At5g35190.1 68418.m04170 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 328
Score = 27.5 bits (58), Expect = 9.6
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Frame = -3
Query: 319 RHRPHPLPVQTRHAPVLRANPYPKLRIQFADFPYLHYSID*RLFTLETCCGYGYEPARHL 140
++ PHP P P +P PK + PY++ S ++ Y P ++
Sbjct: 69 KYTPHPKPYLFNSPPPPYYSPSPKEDYKSPPPPYVYNSPPPPYYSPSPKVDYKSPPPPYV 128
Query: 139 HVHPSPEF---SRSAESIRTPPQMRCSSRSEPY 50
+ P P + S E PP +S PY
Sbjct: 129 YNSPPPPYYSPSPKVEYKSPPPPYVYNSPPPPY 161
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -3
Query: 145 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 56
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,350,382
Number of Sequences: 28952
Number of extensions: 356811
Number of successful extensions: 1062
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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