Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1301
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    28   1.7  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.9  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    27   3.9  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 758 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 654
           +KS + ++   K+++ NK+N +E A Q W +  K+
Sbjct: 141 RKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 758 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 666
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -3

Query: 293 FMYNR---EYNEALVLLGQPTPGVTAWRSDTVAAWSEVPSST 177
           F+ NR   E+ +   +L  P    T W+S   +   ++PSST
Sbjct: 18  FLLNRIRTEFPQLAAVLNDPNAFATTWQSINASQLLQIPSST 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,353
Number of Sequences: 5004
Number of extensions: 64925
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)