Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1301
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496...    33   0.19 
04_04_1020 + 30179214-30179285,30179597-30179671,30179839-301799...    31   1.3  
06_01_1082 - 8847795-8848033,8848511-8848724                           29   3.1  
05_01_0024 - 164618-165139,166884-166949,167046-167216,167321-16...    29   4.1  
09_06_0106 - 20898480-20898680,20898762-20898864,20898953-208990...    29   5.4  
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953...    28   9.4  

>06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629,
            12950167-12950369,12950922-12951620,12951723-12951784,
            12952395-12952404,12954905-12957631
          Length = 1391

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 24/91 (26%), Positives = 39/91 (42%)
 Frame = +3

Query: 231  YPRCRLA*EHQRLVVFAIVHEEQNVVVVLSGLQGPLGLKSFDAVGPVGHVVMVRGCLNCQ 410
            +P   L     RL V   + E  N  + +  ++    ++  DA GP G   ++ G  N  
Sbjct: 1201 FPMVALNESMTRLAVGDAIGEIHNATIRVYDIESVTKIRILDASGPPGLPSLLDGSSNTT 1260

Query: 411  RQILITLSVHNLEVDLVVLPQRNELPADFWT 503
              ILIT    +LE + +V    N L   +W+
Sbjct: 1261 ATILITALSFSLEGEGLVAFSENGLMIRWWS 1291


>04_04_1020 +
           30179214-30179285,30179597-30179671,30179839-30179947,
           30180425-30180642,30180729-30181309,30181387-30182185
          Length = 617

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -3

Query: 569 ALTLDDENSNDGRLLRRWQGQT-----SPKVSWKFVPLWENNKVYFKIVNTQRNQYLTLA 405
           A  + DE+  DG    RW+  T       K+  + +P+W  + VYF I NTQ     T  
Sbjct: 357 AAIVSDEDLEDGD---RWRLCTVSQVEEVKILLRLIPIWLTSAVYF-IANTQAQ--TTFV 410

Query: 404 VQTTPNHNHMAYGANSV 354
            Q T     +A GA SV
Sbjct: 411 QQGTKTDGRIARGAFSV 427


>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 335 WTLQPAKYDNDVLFFMYNREYNEALVLLGQ 246
           W      Y  DVL F YN+EY++  V+ G+
Sbjct: 59  WLAGKTFYAGDVLVFKYNKEYHDVAVVGGK 88


>05_01_0024 -
           164618-165139,166884-166949,167046-167216,167321-167422,
           167538-167600,167679-167825,168234-168359,168742-168921,
           169183-169322,169688-169861,170096-170123
          Length = 572

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 284 NREYNEALVLLGQPTPGVTAWRSDTVAAWSE 192
           NRE  E L+ L  P PGV++W  D +  +++
Sbjct: 230 NREVVELLLPLTSPIPGVSSWSIDGIIEYTK 260


>09_06_0106 -
           20898480-20898680,20898762-20898864,20898953-20899047,
           20899113-20899135,20899725-20899799,20900219-20900267,
           20900349-20900414,20901257-20901306,20901688-20901812,
           20903488-20903600
          Length = 299

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 350 GFKAQWTLQPAKYDNDVLFFMYNREYNEALVLL 252
           GF   WT +P K+DN   F    RE +E L+ L
Sbjct: 181 GFDGAWTKEPLKFDNS-YFLELLREESEGLLKL 212


>02_02_0535 -
           11292509-11294679,11294971-11295040,11295268-11295324,
           11298629-11298789,11299123-11299156
          Length = 830

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -3

Query: 431 QRNQYLTLAVQTTPNHNHMAYGANS 357
           QR Q L+ + +T P +NH ++G+N+
Sbjct: 790 QRKQLLSFSQRTVPVNNHSSHGSNN 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,306,485
Number of Sequences: 37544
Number of extensions: 424568
Number of successful extensions: 1249
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)