Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1301
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               29   3.1  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)                   28   9.5  
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 501

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 284 NREYNEALVLLGQPTP-GVTAWRSDTVAAW 198
           N E NE+  LLG  TP G  +WRS    +W
Sbjct: 415 NAEPNESHFLLGYATPPGYVSWRSQVHGSW 444


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 725 KLIRNNKMNCMEYAYQLWLQGSKDIVRECF 636
           +L  NN+M    +A+  WL+G +   R+C+
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46


>SB_44575| Best HMM Match : DUF444 (HMM E-Value=0.84)
          Length = 451

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 137 SLESRAYALFICSLFIIVHY 78
           S + RAY +F CSL +I+H+
Sbjct: 299 SAKYRAYTMFCCSLSMIIHF 318


>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1392

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -3

Query: 659  KDIVRECFPV-EFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLLRRWQGQTSPKVSWK 483
            ++ V + FPV E  +   E+  K   KR  LALT + E  +  +L   W G TS +  ++
Sbjct: 1065 QETVTKSFPVMELMISGGEDLYKFAKKRKALALTSNVEKLSAIKLNPGWTG-TSERAKYE 1123

Query: 482  F 480
            F
Sbjct: 1124 F 1124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,658,694
Number of Sequences: 59808
Number of extensions: 496143
Number of successful extensions: 1269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)