Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1301
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical pr...    31   0.90 
U50068-8|AAB37739.1|  865|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U97009-13|AAZ94736.1|  456|Caenorhabditis elegans Udp-glucuronos...    28   6.3  
AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf (pumilio/...    28   6.3  

>Z70205-4|CAA94115.2|  528|Caenorhabditis elegans Hypothetical
           protein C11H1.5 protein.
          Length = 528

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 141 MKSVLRKPLYPKRTARDFRPRGHCIRTPCGYPRCRLA*EHQRLVV 275
           +K+     + PK   R +RPRG  +  P  YPRC    E + L +
Sbjct: 455 IKNTCSDGIDPKFVKRWYRPRGSSVCVPYHYPRCSSMEEMEELPI 499


>U50068-8|AAB37739.1|  865|Caenorhabditis elegans Hypothetical
           protein C01G5.8 protein.
          Length = 865

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +3

Query: 405 CQRQILITLSVHN-LEVDLVVLPQR----NELPADFWTRLSLPSP*KSAIVAVLIVQ 560
           C + I I L   + LE +L+++  R     E+PADF T +++ +P K  I A +I +
Sbjct: 580 CAKMIQIALQDPSILEKELLMIQDRALKLKEMPADFVTPINIGNPEKKTITANVITK 636


>Z81507-1|CAB04133.1|  485|Caenorhabditis elegans Hypothetical
           protein F18A11.1 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 746 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIKLMYKRDGL 570
           ++  V+++L  N K+ C ++  QL       IVR C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


>U97009-13|AAZ94736.1|  456|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein10 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -3

Query: 527 LRRWQGQTSPKVSWKFVPLWENNKVYFKIVNTQRNQYLTLAVQTTPNHNHM 375
           L ++Q     K     VP W++      I  T  N YL  AV TTP   H+
Sbjct: 144 LGQYQNNIIEKAVGHSVPYWKDLVSQSPIYITNSNPYLDFAVATTPAIVHI 194


>AF036698-2|AAB88353.1|  485|Caenorhabditis elegans Puf
           (pumilio/fbf) domain-containingprotein 7 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 746 VITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRECFPVEFRLIFAENNIKLMYKRDGL 570
           ++  V+++L  N K+ C ++  QL       IVR C+ +     FA   I+ + K  G+
Sbjct: 257 LVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSN-EFANYVIQYVIKSSGI 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,464,898
Number of Sequences: 27780
Number of extensions: 368181
Number of successful extensions: 1195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)