Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1301
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   7.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.2  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.5  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 159 KPLYPKRTARDFRPRGHCIRTPCGYPR 239
           +P+ P  + ++  PR  CI  P  +PR
Sbjct: 133 RPMGPWISVQEQVPRFRCIGPPTPFPR 159


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +1

Query: 169 TPSVLLGTSDHAATVSERHAVTPGVGWPRSTNASLYSRLYMKNKTSLS 312
           +P V    S  A+T    H V    G PR ++ S    L    K  LS
Sbjct: 277 SPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 641 TPGRYLWSLGAIAGRRTP 694
           TPG + +S+ A+A   TP
Sbjct: 304 TPGSFNFSMAALATEHTP 321


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = -2

Query: 762 GQEERSHHKCRKQTHTKQQDELHGVRLPAMAPRLQRYR 649
           G+   S  + R+    ++ D+LH V    +  R  R R
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSRRR 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,406
Number of Sequences: 438
Number of extensions: 5252
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)