Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1301
         (766 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39580.1 68415.m04855 expressed protein                             28   5.9  
At2g02580.1 68415.m00198 cytochrome P450 family protein                28   7.8  

>At2g39580.1 68415.m04855 expressed protein
          Length = 1567

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 362 WPRRPCGYGSGLFELPTSNT 421
           W R PC   SGL+ +P S T
Sbjct: 392 WKRLPCSNNSGLYNIPGSTT 411


>At2g02580.1 68415.m00198 cytochrome P450 family protein 
          Length = 500

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 494 VSWKFVPLWENNKVYFKIVNTQRNQYLTLAVQTTPNHNHMAYGANSVEGFKAQWTLQP 321
           ++W    L  N +V  K+ +  RNQ +  +V T  + +H+ Y    +   K  W L P
Sbjct: 310 MTWAMAELIRNPRVMKKVQSEIRNQMINKSVITLDDIDHLPYLKMVI---KETWRLHP 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,328,349
Number of Sequences: 28952
Number of extensions: 336459
Number of successful extensions: 919
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)