Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm1296
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   7.9  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   7.9  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   7.9  
SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomy...    25   7.9  

>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = -3

Query: 322 SDIWFMHSPSGRWCEATIRGIMPNASKAEASLAESG 215
           +D+W  H     W +    G+ PN     A+    G
Sbjct: 268 NDLWCYHPKQSAWSKVETFGVAPNPRAGHAASVVEG 303


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 621  SPYAY*TSGSSQLLPFCSTRGF 686
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 353 NTAQYERNRSFGHLVHALAERPVVRSYHPRDYAERL 246
           N  Q+ ++    HL H L+E P+++     + A+RL
Sbjct: 733 NDTQWLKDNLDSHLSHTLSEDPLIKVEELEEKAKRL 768


>SPCC970.02 |||mannan endo-1,6-alpha-mannosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 294 LGECMNQMSETAVPLVLSSITIATTSHQ*GKTNLSHDGLSPAHVPF 431
           LGE M+ +     PL+L S+ +   S+    T   + GL  A V F
Sbjct: 370 LGEQMSALEAIQAPLLLKSLQVFKASNGGSSTGDPNAGLYTAPVSF 415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,952
Number of Sequences: 5004
Number of extensions: 59408
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)